Os04g0562000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, DHHC-type domain containing protein.
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Os04g0562000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, DHHC-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19.33 | 0.207 | 10.4 | -0.163 | 1.13 | 0.234 | 1.24 | 0.698 | 0.446 | 3.58 | 21.1 | 37 | -- | -- |
| 21.24 | 0.215 | 10.4 | -0.338 | 1.14 | 0.227 | 0.755 | -- | 0.399 | 3.63 | 21.43 | 2 | -- | -- |
| 22.75 | 0.224 | 10.4 | -0.298 | 1.13 | 0.211 | -- | 0.195 | 0.409 | 3.64 | 21.64 | 87 | -- | -- |
| 22.95 | 0.223 | 10.4 | -0.348 | 1.13 | 0.216 | -- | -- | 0.403 | 3.65 | 21.41 | 3 | -- | -- |
| 49.28 | 0.327 | 10.4 | -0.0238 | -- | -0.695 | -- | 0.295 | 0.662 | -- | 26.4 | 155 | -- | -- |
| 23.53 | 0.227 | 10.4 | -0.276 | 1.07 | -- | 0.753 | -- | 0.457 | 3.81 | -- | -- | -- | -- |
| 25.21 | 0.235 | 10.4 | -0.286 | 1.08 | -- | -- | -- | 0.453 | 3.82 | -- | -- | -- | -- |
| 49.4 | 0.327 | 10.4 | -0.0624 | -- | -0.686 | -- | -- | 0.661 | -- | 26.33 | 151 | -- | -- |
| 26.03 | 0.238 | 10.4 | -- | 1.11 | 0.161 | -- | -- | 0.446 | 3.7 | 21.6 | 3 | -- | -- |
| 89.06 | 0.441 | 10.4 | -0.242 | -- | -- | -- | -- | 0.481 | -- | -- | -- | -- | -- |
| 27.37 | 0.245 | 10.4 | -- | 1.07 | -- | -- | -- | 0.484 | 3.83 | -- | -- | -- | -- |
| 49.51 | 0.328 | 10.4 | -- | -- | -0.691 | -- | -- | 0.669 | -- | 26.37 | 151 | -- | -- |
| 90.6 | 0.444 | 10.4 | -- | -- | -- | -- | -- | 0.508 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.85 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 20 | 9 |
| 14 | 18.67 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 19 | 5 |
| 25 | 18.81 | temperature | 25.0 | 720 | < th | dose dependent | rect. | 21 | 2 |
| 26 | 18.81 | temperature | 25.0 | 270 | < th | dose dependent | rect. | 18 | 13 |
| 33 | 18.86 | temperature | 25.0 | 270 | < th | dose dependent | sin | 13 | NA |
| 76 | 19.14 | temperature | 25.0 | 720 | < th | dose independent | rect. | 18 | 8 |
| 94 | 19.19 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 103 | 19.24 | temperature | 25.0 | 720 | > th | dose independent | rect. | 17 | 8 |
| 117 | 19.29 | temperature | 20.0 | 90 | > th | dose independent | rect. | 11 | 18 |
| 143 | 19.35 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 19 | 4 |
| 160 | 19.39 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 9 |
| 164 | 19.40 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 21 | 6 |
| 199 | 19.46 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 10 | 1 |
| 205 | 19.47 | humidity | 80.0 | 4320 | < th | dose independent | rect. | 10 | 1 |
| 235 | 19.51 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 2 |
| 306 | 19.61 | humidity | 80.0 | 4320 | > th | dose independent | rect. | 9 | 3 |
| 330 | 19.64 | humidity | 70.0 | 4320 | > th | dose dependent | rect. | 10 | 1 |
| 362 | 19.68 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 22 |
| 444 | 19.76 | wind | 3.0 | 14400 | < th | dose dependent | sin | 10 | NA |
| 460 | 19.78 | humidity | 90.0 | 4320 | > th | dose dependent | rect. | 7 | 7 |
| 498 | 19.82 | temperature | 25.0 | 720 | < th | dose independent | sin | 15 | NA |
| 635 | 19.93 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 4 |
| 681 | 19.98 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 10 |
| 710 | 20.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 12 |
| 711 | 20.00 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 15 |
| 712 | 20.00 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 4 | 3 |
| 722 | 20.01 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 724 | 20.01 | temperature | 20.0 | 90 | > th | dose independent | rect. | 19 | 10 |
| 726 | 20.01 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 746 | 20.02 | temperature | 20.0 | 90 | > th | dose independent | rect. | 21 | 8 |
| 763 | 20.03 | wind | 1.0 | 14400 | > th | dose independent | rect. | 19 | 16 |
| 782 | 20.04 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 785 | 20.04 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 7 | 1 |
| 843 | 20.08 | temperature | 25.0 | 720 | > th | dose independent | sin | 15 | NA |
| 844 | 20.08 | temperature | 25.0 | 720 | < th | dose independent | rect. | 23 | 1 |
| 866 | 20.09 | wind | 1.0 | 14400 | < th | dose independent | rect. | 19 | 12 |
| 876 | 20.09 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 9 |
| 891 | 20.10 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 5 | 1 |
| 907 | 20.11 | wind | 1.0 | 14400 | > th | dose independent | rect. | 21 | 8 |
| 920 | 20.12 | wind | 1.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 921 | 20.12 | temperature | 25.0 | 720 | < th | dose independent | rect. | 20 | 1 |
| 928 | 20.12 | humidity | 90.0 | 4320 | < th | dose dependent | rect. | 10 | 2 |
| 944 | 20.13 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 8 |
| 962 | 20.14 | humidity | 90.0 | 4320 | > th | dose independent | rect. | 7 | 3 |
| 983 | 20.15 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 11 |