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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0561900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Peptidase S9A, prolyl oligopeptidase family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 2.91 (0.0241) R2 : 0.000574
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0259 (0.0507) R2dN8 : 0.000741 R2N8 : 0.000574
σ : 0.453
deviance : 94.34
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
87.72 0.44 2.91 0.096 0.0946 0.925 0.54 0.835 0.0818 3.45 1016 4612 -- --
88 0.437 2.9 0.121 0.0812 0.56 0.569 -- 0.0924 2.78 1015 4741 -- --
88.33 0.438 2.91 0.0804 0.129 1.12 -- 1.1 0.0761 5.14 1016 4428 -- --
88.69 0.439 2.9 0.123 0.121 0.635 -- -- 0.0912 5.51 1015 4625 -- --
89.08 0.44 2.91 0.0778 -- 1.08 -- 1.04 0.0801 -- 1016 4415 -- --
92.66 0.451 2.91 0.00577 0.078 -- 0.641 -- 0.0272 3.33 -- -- -- --
93.76 0.453 2.91 -0.00632 0.105 -- -- -- 0.0231 5.62 -- -- -- --
89.46 0.441 2.9 0.12 -- 0.609 -- -- 0.0902 -- 1015 4649 -- --
88.95 0.439 2.9 -- 0.12 0.499 -- -- 0.0767 5.59 1015 4740 -- --
94.34 0.454 2.91 -0.00294 -- -- -- -- 0.0256 -- -- -- -- --
93.76 0.453 2.91 -- 0.105 -- -- -- 0.0238 5.62 -- -- -- --
89.69 0.441 2.9 -- -- 0.479 -- -- 0.0781 -- 1014 4760 -- --
94.34 0.453 2.91 -- -- -- -- -- 0.0259 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 80.95 atmosphere 1015.0 1440 > th dose dependent rect. 3 9
2 81.33 atmosphere 1015.0 1440 < th dose independent rect. 4 7
5 81.37 atmosphere 1015.0 1440 < th dose independent rect. 8 3
7 81.41 atmosphere 1015.0 1440 < th dose independent rect. 6 6
12 81.45 atmosphere 1015.0 1440 < th dose independent rect. 11 1
13 81.46 atmosphere 1015.0 1440 > th dose independent rect. 10 1
29 81.46 atmosphere 1015.0 1440 > th dose dependent rect. 10 1
64 85.10 humidity 90.0 270 > th dose independent rect. 11 1
65 85.10 precipitation 0.1 270 > th dose independent rect. 10 1
67 85.10 temperature 20.0 10 < th dose independent rect. 11 3
70 85.10 temperature 20.0 270 < th dose dependent rect. 10 1
71 85.10 humidity 90.0 270 > th dose dependent rect. 11 1
72 85.10 precipitation 0.1 270 > th dose dependent rect. 10 1
75 85.11 temperature 20.0 270 < th dose independent rect. 10 1
77 85.12 temperature 20.0 270 < th dose dependent rect. 9 3
91 85.49 temperature 20.0 10 < th dose dependent rect. 11 4
101 85.78 temperature 20.0 10 < th dose independent rect. 4 11
118 86.06 atmosphere 1010.0 270 > th dose independent rect. 5 6
134 86.22 temperature 20.0 90 < th dose independent rect. 3 3
135 86.26 atmosphere 1010.0 270 > th dose independent sin 5 NA
154 86.39 atmosphere 1010.0 270 > th dose independent rect. 6 2
162 86.40 atmosphere 1010.0 270 > th dose independent rect. 5 15
216 86.44 temperature 20.0 10 < th dose independent rect. 4 2
217 86.44 atmosphere 1010.0 90 > th dose independent rect. 8 3
245 86.61 temperature 20.0 30 < th dose independent sin 1 NA
258 86.62 temperature 20.0 10 > th dose independent sin 0 NA
261 86.64 temperature 20.0 90 < th dose independent rect. 4 1
269 86.67 atmosphere 1010.0 720 > th dose independent rect. 2 1
272 86.67 atmosphere 1010.0 720 > th dose independent rect. 22 7
291 86.73 atmosphere 1010.0 1440 < th dose independent rect. 15 1
293 86.75 atmosphere 1010.0 1440 > th dose independent rect. 14 1
348 86.91 temperature 20.0 90 < th dose independent rect. 3 7
363 86.98 atmosphere 1010.0 720 > th dose independent sin 9 NA
391 87.03 atmosphere 1015.0 4320 > th dose dependent rect. 14 1
429 87.12 atmosphere 1010.0 270 < th dose independent sin 0 NA
454 87.18 atmosphere 1010.0 1440 < th dose independent rect. 11 6
528 87.33 atmosphere 1015.0 4320 > th dose dependent rect. 13 5
591 87.45 atmosphere 1010.0 30 < th dose independent rect. 3 23
628 87.51 temperature 20.0 10 < th dose independent rect. 11 1
653 87.51 temperature 20.0 10 < th dose dependent rect. 11 1
703 87.54 atmosphere 1010.0 720 < th dose independent rect. 23 7
726 87.57 humidity 80.0 10 > th dose independent rect. 9 5
731 87.57 atmosphere 1010.0 270 < th dose independent rect. 7 12
739 87.58 atmosphere 1010.0 270 < th dose independent sin 5 NA
769 87.61 atmosphere 1010.0 1440 > th dose dependent rect. 10 6
775 87.62 atmosphere 1010.0 720 < th dose independent rect. 21 9
781 87.62 wind 1.0 720 < th dose dependent rect. 21 1
788 87.63 temperature 25.0 10 < th dose dependent rect. 4 3
789 87.63 atmosphere 1005.0 720 > th dose dependent rect. 22 5
841 87.68 atmosphere 1010.0 270 < th dose independent rect. 1 12
847 87.69 temperature 15.0 720 < th dose independent rect. 2 1
853 87.69 temperature 15.0 720 < th dose dependent rect. 2 1
870 87.71 temperature 25.0 30 < th dose dependent rect. 6 1
887 87.72 atmosphere 1015.0 4320 > th dose dependent rect. 9 12
896 87.73 atmosphere 1010.0 270 < th dose independent rect. 5 13
933 87.77 atmosphere 1010.0 1440 > th dose independent sin 21 NA
955 87.78 atmosphere 1010.0 270 < th dose independent rect. 23 13
994 87.82 temperature 25.0 30 < th dose independent rect. 9 11