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Os04g0561500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Prolyl endopeptidase (EC 3.4.21.26) (Post-proline cleaving enzyme) (PE).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.5 (0.0797) R2 : 0.365
β1 : -1.16 (0.402) R2dD : 0.0266 R2D : -0.0777
β2 : 1.85 (0.187) R2dC : 0.136 R2C : 0.139
β3 : -0.593 (0.387) R2dE : 0.00637 R2E : -0.0493
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -12.1 (1.48) R2dD*E : 0.313 R2D*E : 0.149
γ1 : 0.658 (0.172) R2dN8 : 0.0318 R2N8 : 0.0518
σ : 1.39
deviance : 894.4
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C
peak time of C : 8.49
E
wheather : radiation
threshold : 0.3801
memory length : 4251
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 11
open length of G : --

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
895.03 1.41 11.5 -1.19 1.85 -0.611 0.0122 -12.2 0.657 8.54 0.3881 4270 11.1 --
1049.06 1.52 11.3 1.48 2.02 0.996 -0.222 -- 1.2 7.49 0.3881 4270 11.1 --
894.4 1.39 11.5 -1.16 1.85 -0.593 -- -12.1 0.658 8.49 0.3801 4251 11 --
999.92 1.47 11.3 0.804 1.67 1.89 -- -- 0.976 7.76 0.0002954 4374 12.7 --
1066.73 1.52 11.5 -0.345 -- -2.57 -- -14.4 0.981 -- 0.388 4163 17.3 --
1064.79 1.53 11.3 1.49 1.84 -- 0.491 -- 1.21 8.83 -- -- -- --
1065.55 1.53 11.3 1.51 1.84 -- -- -- 1.21 8.77 -- -- -- --
999.46 1.47 11.2 1.08 -- -3.49 -- -- 1.57 -- 8.94 2478 19.7 --
995.39 1.47 11.3 -- 1.87 2.36 -- -- 0.843 8.54 0.006016 4354 14.8 --
1258.7 1.66 11.3 1.51 -- -- -- -- 1.22 -- -- -- -- --
1125.57 1.57 11.3 -- 1.85 -- -- -- 1.04 8.71 -- -- -- --
1026.16 1.49 11.2 -- -- -3.61 -- -- 1.43 -- 9.06 2489 20.6 --
1318.96 1.7 11.4 -- -- -- -- -- 1.05 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 903.32 radiation 1.0 4320 < th dose dependent rect. 17 1
2 905.19 radiation 1.0 4320 < th dose dependent rect. 11 19
4 906.85 radiation 1.0 4320 < th dose dependent rect. 11 8
5 906.88 radiation 1.0 4320 < th dose dependent rect. 11 12
7 906.94 radiation 1.0 4320 < th dose dependent sin 16 NA
39 908.84 radiation 1.0 4320 < th dose dependent rect. 17 6
40 908.86 wind 1.0 14400 < th dose dependent rect. 20 3
49 909.46 radiation 1.0 4320 < th dose dependent rect. 17 11
81 910.62 wind 1.0 14400 < th dose dependent rect. 20 5
102 913.34 precipitation 0.1 43200 < th dose independent rect. 10 2
103 913.34 precipitation 0.1 43200 < th dose dependent rect. 10 2
107 913.54 precipitation 0.1 43200 > th dose independent rect. 10 2
108 913.54 precipitation 0.1 43200 > th dose dependent rect. 10 2
109 914.33 radiation 1.0 4320 > th dose dependent rect. 4 3
135 915.86 radiation 40.0 4320 < th dose dependent rect. 24 8
137 915.96 radiation 40.0 4320 < th dose dependent rect. 21 11
142 916.12 radiation 40.0 4320 < th dose dependent rect. 2 6
146 916.35 radiation 40.0 4320 < th dose dependent rect. 4 4
154 916.58 radiation 1.0 4320 < th dose independent rect. 17 1
173 916.97 precipitation 0.1 43200 < th dose independent rect. 20 2
174 916.97 precipitation 0.1 43200 < th dose dependent rect. 20 2
175 916.97 precipitation 0.1 43200 > th dose dependent rect. 20 3
178 917.04 precipitation 0.1 43200 > th dose independent rect. 20 2
195 917.58 precipitation 0.1 43200 < th dose independent rect. 8 4
196 917.58 precipitation 0.1 43200 < th dose dependent rect. 8 4
204 917.88 precipitation 0.1 43200 > th dose independent rect. 8 4
205 917.88 precipitation 0.1 43200 > th dose dependent rect. 8 4
206 917.91 radiation 1.0 4320 > th dose independent rect. 11 8
217 918.05 precipitation 0.1 43200 > th dose independent rect. 8 1
218 918.05 precipitation 0.1 43200 > th dose dependent rect. 8 1
219 918.11 radiation 1.0 4320 > th dose independent rect. 17 1
224 918.17 radiation 1.0 4320 < th dose independent rect. 11 12
226 918.18 radiation 1.0 4320 < th dose independent rect. 11 15
230 918.20 radiation 1.0 4320 < th dose independent rect. 11 8
251 918.53 precipitation 0.1 43200 < th dose independent rect. 8 1
252 918.53 precipitation 0.1 43200 < th dose dependent rect. 8 1
254 918.72 radiation 1.0 4320 < th dose independent rect. 11 19
269 919.29 radiation 1.0 4320 > th dose independent rect. 11 19
286 919.62 radiation 10.0 4320 < th dose dependent rect. 6 1
362 920.71 radiation 10.0 4320 < th dose independent rect. 6 2
366 920.75 radiation 1.0 4320 > th dose independent sin 17 NA
394 921.30 radiation 1.0 4320 < th dose independent sin 16 NA
402 921.50 wind 1.0 14400 < th dose independent rect. 20 5
403 921.56 wind 1.0 14400 > th dose independent rect. 20 3
422 922.15 radiation 10.0 4320 < th dose independent rect. 24 8
423 922.15 radiation 10.0 4320 < th dose independent rect. 21 11
424 922.17 wind 1.0 14400 < th dose independent rect. 20 3
432 922.23 radiation 10.0 4320 < th dose independent rect. 2 6
467 923.33 radiation 40.0 43200 < th dose independent rect. 16 15
541 924.86 atmosphere 995.0 43200 < th dose independent rect. 23 16
572 925.57 atmosphere 995.0 43200 < th dose dependent rect. 12 16
574 925.59 atmosphere 995.0 43200 < th dose dependent rect. 13 14
587 925.86 atmosphere 995.0 43200 < th dose independent sin 5 NA
600 926.02 atmosphere 995.0 43200 < th dose dependent rect. 12 20
603 926.05 atmosphere 995.0 43200 > th dose independent rect. 19 20
628 926.19 radiation 1.0 4320 < th dose independent rect. 17 7
645 926.33 atmosphere 995.0 43200 < th dose dependent sin 16 NA
657 926.41 radiation 1.0 4320 < th dose independent rect. 17 9
680 926.65 radiation 1.0 4320 < th dose independent rect. 17 11
690 926.83 atmosphere 995.0 43200 > th dose independent sin 6 NA
740 927.44 radiation 1.0 4320 < th dose dependent rect. 5 18
742 927.46 radiation 1.0 4320 < th dose dependent rect. 5 14
796 928.08 atmosphere 995.0 43200 > th dose independent sin 11 NA
821 928.41 atmosphere 995.0 43200 < th dose independent sin 11 NA
839 928.62 atmosphere 995.0 43200 > th dose independent rect. 17 19
884 928.79 wind 1.0 14400 < th dose dependent rect. 17 10
886 928.80 radiation 1.0 4320 < th dose dependent rect. 22 21
905 928.86 precipitation 0.1 43200 < th dose independent rect. 18 5
907 928.86 radiation 1.0 4320 < th dose dependent no NA NA
908 928.86 precipitation 0.1 43200 < th dose dependent rect. 18 5
946 929.37 atmosphere 995.0 43200 < th dose independent rect. 17 13
950 929.38 radiation 1.0 4320 < th dose dependent rect. 17 23
958 929.69 precipitation 0.1 43200 > th dose independent rect. 18 5
983 930.25 atmosphere 995.0 43200 < th dose dependent no NA NA
984 930.25 atmosphere 995.0 43200 < th dose dependent rect. 21 22