Os04g0560600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Calcium-dependent protein kinase 3 (Fragment).
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Os04g0560600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Calcium-dependent protein kinase 3 (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 94.94 | 0.458 | 10.6 | -0.963 | 0.692 | -2.5 | -1.63 | -0.0873 | -0.125 | 13.4 | 2.244 | 971 | 18.5 | -- |
| 94.85 | 0.454 | 10.6 | -0.959 | 0.694 | -2.48 | -1.65 | -- | -0.124 | 13.5 | 2.377 | 971 | 18.5 | -- |
| 105.52 | 0.478 | 10.6 | -0.983 | 0.75 | -2.6 | -- | -0.452 | -0.103 | 13.1 | 2.16 | 975 | 18.6 | -- |
| 105.57 | 0.479 | 10.6 | -1.03 | 0.657 | -2.55 | -- | -- | -0.143 | 13.3 | 2.244 | 975 | 18.5 | -- |
| 112.56 | 0.494 | 10.5 | -0.995 | -- | -2.56 | -- | 0.593 | 0.0409 | -- | 2.164 | 930 | 17.6 | -- |
| 162.71 | 0.598 | 10.5 | -0.486 | 0.652 | -- | -1.81 | -- | 0.127 | 14.9 | -- | -- | -- | -- |
| 172.87 | 0.616 | 10.5 | -0.527 | 0.672 | -- | -- | -- | 0.117 | 15.7 | -- | -- | -- | -- |
| 109.28 | 0.487 | 10.6 | -0.917 | -- | -2.62 | -- | -- | -0.0799 | -- | 2.344 | 921 | 17.4 | -- |
| 130.69 | 0.532 | 10.6 | -- | 0.575 | -2.03 | -- | -- | -0.00495 | 13.8 | 2.693 | 971 | 18.3 | -- |
| 197.9 | 0.657 | 10.5 | -0.555 | -- | -- | -- | -- | 0.0992 | -- | -- | -- | -- | -- |
| 180.18 | 0.628 | 10.5 | -- | 0.682 | -- | -- | -- | 0.176 | 15.6 | -- | -- | -- | -- |
| 132.39 | 0.536 | 10.6 | -- | -- | -2.42 | -- | -- | -0.002 | -- | 2.76 | 910 | 17.2 | -- |
| 206.02 | 0.67 | 10.5 | -- | -- | -- | -- | -- | 0.161 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 110.97 | humidity | 80 | 1440 | < th | dose independent | rect. | 7 | 7 |
| 13 | 113.35 | humidity | 80 | 1440 | > th | dose independent | rect. | 7 | 7 |
| 25 | 114.46 | radiation | 1 | 1440 | < th | dose independent | sin | 0 | NA |
| 32 | 114.83 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 11 |
| 35 | 114.90 | radiation | 1 | 1440 | > th | dose independent | sin | 0 | NA |
| 38 | 115.03 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 11 |
| 39 | 115.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 11 |
| 43 | 115.30 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 50 | 115.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 51 | 115.55 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 52 | 115.61 | radiation | 1 | 1440 | < th | dose dependent | sin | 0 | NA |
| 65 | 115.77 | radiation | 1 | 1440 | < th | dose independent | rect. | 19 | 23 |
| 70 | 115.84 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 20 |
| 75 | 115.98 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 111 | 116.31 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 130 | 116.44 | humidity | 80 | 1440 | < th | dose independent | sin | 4 | NA |
| 143 | 116.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 14 |
| 144 | 116.51 | radiation | 1 | 1440 | < th | dose dependent | rect. | 19 | 23 |
| 153 | 116.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 20 |
| 186 | 117.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 16 |
| 187 | 117.04 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 18 |
| 245 | 117.35 | radiation | 1 | 1440 | < th | dose independent | rect. | 22 | 23 |
| 247 | 117.36 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 290 | 117.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 321 | 117.72 | radiation | 1 | 270 | < th | dose independent | rect. | 5 | 13 |
| 324 | 117.74 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 372 | 117.75 | radiation | 1 | 270 | < th | dose dependent | rect. | 5 | 12 |
| 386 | 117.97 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 416 | 118.11 | humidity | 80 | 1440 | > th | dose independent | sin | 3 | NA |
| 444 | 118.32 | radiation | 1 | 1440 | < th | dose independent | rect. | 15 | 23 |
| 495 | 118.71 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 23 |
| 546 | 118.92 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 551 | 118.94 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 573 | 119.06 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 580 | 119.16 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 627 | 119.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 2 |
| 630 | 119.63 | humidity | 70 | 1440 | > th | dose dependent | rect. | 9 | 5 |
| 643 | 119.73 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 664 | 119.81 | radiation | 1 | 270 | > th | dose independent | sin | 1 | NA |
| 699 | 120.06 | humidity | 70 | 90 | > th | dose dependent | sin | 0 | NA |
| 797 | 120.76 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 818 | 120.89 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 838 | 121.04 | radiation | 1 | 1440 | > th | dose independent | rect. | 15 | 2 |
| 887 | 121.33 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 10 |
| 943 | 121.86 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 14 |
| 945 | 121.87 | humidity | 70 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 948 | 121.89 | humidity | 80 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 998 | 122.42 | temperature | 15 | 90 | > th | dose dependent | rect. | 7 | 22 |