Os04g0560300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to FLOWERING LOCUS D (Fragment).
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Os04g0560300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to FLOWERING LOCUS D (Fragment).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.39 | 0.4 | 9.22 | 2.28 | 1.55 | 1.2 | -0.42 | -0.596 | 0.618 | 17.2 | 79 | 1363 | -- | -- |
| 72.51 | 0.397 | 9.22 | 2.23 | 1.53 | 1.16 | -0.432 | -- | 0.62 | 17.3 | 79 | 1317 | -- | -- |
| 72.68 | 0.397 | 9.22 | 2.31 | 1.53 | 1.16 | -- | -0.573 | 0.621 | 17.2 | 78.99 | 1325 | -- | -- |
| 72.87 | 0.398 | 9.23 | 2.23 | 1.52 | 1.12 | -- | -- | 0.597 | 17.4 | 79 | 1260 | -- | -- |
| 190.32 | 0.643 | 9.19 | 2.25 | -- | 1.6 | -- | -0.503 | 0.601 | -- | 78.36 | 1271 | -- | -- |
| 89.25 | 0.443 | 9.23 | 2.18 | 1.61 | -- | -0.297 | -- | 0.553 | 17.1 | -- | -- | -- | -- |
| 89.48 | 0.443 | 9.23 | 2.18 | 1.61 | -- | -- | -- | 0.551 | 17.1 | -- | -- | -- | -- |
| 190.56 | 0.643 | 9.2 | 2.21 | -- | 1.58 | -- | -- | 0.591 | -- | 78.62 | 1271 | -- | -- |
| 189.9 | 0.642 | 9.26 | -- | 1.56 | 1.16 | -- | -- | 0.447 | 17.2 | 87.9 | 1469 | -- | -- |
| 225.6 | 0.702 | 9.22 | 2.12 | -- | -- | -- | -- | 0.511 | -- | -- | -- | -- | -- |
| 214.39 | 0.685 | 9.29 | -- | 1.57 | -- | -- | -- | 0.309 | 17.2 | -- | -- | -- | -- |
| 300.75 | 0.808 | 9.22 | -- | -- | 1.58 | -- | -- | 0.466 | -- | 86 | 1283 | -- | -- |
| 344.14 | 0.866 | 9.27 | -- | -- | -- | -- | -- | 0.275 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.41 | temperature | 20.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 2 | 71.55 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 21 |
| 3 | 71.57 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 20 |
| 18 | 72.21 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 19 | 6 |
| 21 | 72.26 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 20 | 2 |
| 27 | 72.46 | wind | 5.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 36 | 72.65 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 14 |
| 40 | 72.70 | temperature | 20.0 | 270 | > th | dose independent | rect. | 20 | 15 |
| 46 | 72.75 | humidity | 80.0 | 720 | < th | dose dependent | rect. | 19 | 9 |
| 49 | 72.79 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 23 |
| 51 | 72.80 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 11 | 23 |
| 74 | 73.08 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 23 |
| 75 | 73.08 | temperature | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 78 | 73.12 | humidity | 80.0 | 1440 | > th | dose independent | no | NA | NA |
| 86 | 73.16 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 23 | 23 |
| 88 | 73.18 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 23 |
| 91 | 73.21 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 113 | 73.38 | humidity | 80.0 | 1440 | < th | dose independent | no | NA | NA |
| 124 | 73.45 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 157 | 73.58 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 159 | 73.59 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 13 |
| 175 | 73.65 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 20 | 14 |
| 176 | 73.65 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 12 | 18 |
| 181 | 73.68 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 23 | 17 |
| 209 | 73.82 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 4 |
| 210 | 73.82 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 245 | 73.94 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 19 |
| 247 | 73.95 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 12 | NA |
| 308 | 74.14 | humidity | 80.0 | 1440 | < th | dose independent | sin | 8 | NA |
| 313 | 74.14 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 14 | NA |
| 328 | 74.20 | humidity | 80.0 | 720 | > th | dose independent | rect. | 19 | 8 |
| 355 | 74.27 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 18 | 22 |
| 359 | 74.29 | humidity | 80.0 | 1440 | > th | dose independent | sin | 8 | NA |
| 390 | 74.35 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 19 | 14 |
| 410 | 74.40 | wind | 9.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 458 | 74.52 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 15 |
| 469 | 74.55 | humidity | 80.0 | 720 | > th | dose independent | sin | 12 | NA |
| 563 | 74.73 | wind | 1.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 605 | 74.81 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 9 |
| 612 | 74.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 614 | 74.82 | temperature | 30.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 615 | 74.82 | humidity | 50.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 618 | 74.82 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 1 | 4 |
| 619 | 74.82 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 621 | 74.82 | radiation | 20.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 624 | 74.82 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 20 |
| 627 | 74.82 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 631 | 74.83 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 4 |
| 647 | 74.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 5 | 20 |
| 652 | 74.86 | radiation | 1.0 | 270 | < th | dose independent | rect. | 1 | 4 |
| 654 | 74.86 | humidity | 80.0 | 720 | < th | dose independent | rect. | 17 | 11 |
| 728 | 74.97 | humidity | 60.0 | 1440 | > th | dose dependent | no | NA | NA |
| 786 | 75.08 | wind | 5.0 | 10 | < th | dose independent | rect. | 3 | 3 |
| 797 | 75.09 | wind | 7.0 | 90 | < th | dose dependent | rect. | 3 | 3 |
| 805 | 75.11 | wind | 1.0 | 270 | > th | dose independent | rect. | 3 | 1 |
| 813 | 75.11 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 815 | 75.11 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 832 | 75.13 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 2 | 23 |
| 842 | 75.15 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 1 |
| 843 | 75.15 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 1 |
| 873 | 75.18 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 3 | 3 |
| 876 | 75.18 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 3 | 3 |
| 881 | 75.18 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 18 | 22 |
| 954 | 75.29 | temperature | 20.0 | 10 | > th | dose independent | rect. | 22 | 14 |
| 979 | 75.32 | humidity | 80.0 | 720 | < th | dose independent | rect. | 18 | 4 |