Os04g0560200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Thioredoxin domain 2 containing protein.
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Os04g0560200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Thioredoxin domain 2 containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.86 | 0.215 | 9.76 | 0.601 | 0.905 | 0.845 | -0.758 | 0.881 | 0.0909 | 22.4 | 21.27 | 19 | -- | -- |
| 21.53 | 0.216 | 9.77 | 0.513 | 0.901 | 0.886 | -0.888 | -- | 0.0699 | 22.5 | 21.47 | 32 | -- | -- |
| 22.64 | 0.222 | 9.75 | 0.723 | 0.918 | 0.853 | -- | 1.52 | 0.109 | 22.5 | 20.31 | 14 | -- | -- |
| 24.92 | 0.233 | 9.78 | 0.475 | 0.908 | 0.945 | -- | -- | 0.0437 | 22.6 | 21.44 | 33 | -- | -- |
| 45 | 0.312 | 9.75 | 0.328 | -- | 1.26 | -- | 0.04 | -0.00598 | -- | 16.8 | 664 | -- | -- |
| 35 | 0.277 | 9.74 | 0.635 | 0.802 | -- | -1.04 | -- | 0.199 | 21.2 | -- | -- | -- | -- |
| 38.79 | 0.292 | 9.74 | 0.672 | 0.808 | -- | -- | -- | 0.201 | 21 | -- | -- | -- | -- |
| 44.91 | 0.312 | 9.77 | 0.337 | -- | 1.29 | -- | -- | -0.0155 | -- | 16.7 | 672 | -- | -- |
| 30.44 | 0.257 | 9.79 | -- | 0.931 | 1.09 | -- | -- | -0.029 | 22.8 | 21.1 | 33 | -- | -- |
| 76.38 | 0.408 | 9.72 | 0.674 | -- | -- | -- | -- | 0.196 | -- | -- | -- | -- | -- |
| 50.7 | 0.333 | 9.76 | -- | 0.808 | -- | -- | -- | 0.126 | 21.1 | -- | -- | -- | -- |
| 47.63 | 0.321 | 9.78 | -- | -- | 1.41 | -- | -- | -0.0692 | -- | 16.5 | 682 | -- | -- |
| 88.35 | 0.439 | 9.74 | -- | -- | -- | -- | -- | 0.121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.66 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 6 | 19.99 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 22 |
| 7 | 20.01 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 9 | 20.08 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 13 | 20.18 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 15 | 20.22 | temperature | 15 | 720 | > th | dose dependent | sin | 7 | NA |
| 20 | 20.32 | temperature | 20 | 270 | > th | dose dependent | sin | 4 | NA |
| 21 | 20.33 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 16 |
| 53 | 20.65 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 56 | 20.71 | temperature | 20 | 270 | > th | dose dependent | rect. | 17 | 23 |
| 57 | 20.71 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 96 | 20.94 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 102 | 20.98 | temperature | 20 | 30 | > th | dose dependent | no | NA | NA |
| 116 | 21.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 1 | 23 |
| 117 | 21.03 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 23 |
| 167 | 21.26 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 23 |
| 177 | 21.33 | temperature | 30 | 270 | < th | dose dependent | sin | 4 | NA |
| 190 | 21.37 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 220 | 21.47 | temperature | 20 | 30 | > th | dose dependent | rect. | 3 | 23 |
| 256 | 21.58 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 18 |
| 259 | 21.61 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 263 | 21.62 | temperature | 20 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 295 | 21.73 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 344 | 21.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 411 | 22.01 | temperature | 30 | 720 | < th | dose dependent | sin | 9 | NA |
| 467 | 22.10 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 511 | 22.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 516 | 22.17 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 542 | 22.20 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 571 | 22.24 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 618 | 22.30 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 740 | 22.49 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 799 | 22.58 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 828 | 22.64 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 19 |
| 840 | 22.65 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 874 | 22.70 | temperature | 20 | 10 | > th | dose dependent | rect. | 6 | 14 |
| 988 | 22.85 | temperature | 25 | 1440 | < th | dose dependent | rect. | 7 | 18 |