Os04g0559800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to YDA.
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Os04g0559800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to YDA.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.02 | 0.329 | 7.8 | 2.12 | 0.694 | -0.683 | -0.186 | 3.81 | 0.4 | 9.27 | 20.1 | 1716 | -- | -- |
| 59.42 | 0.359 | 7.91 | 1.26 | 0.71 | -0.744 | -0.297 | -- | 0.21 | 9.01 | 11.02 | 9519 | -- | -- |
| 49.1 | 0.326 | 7.8 | 2.13 | 0.687 | -0.688 | -- | 3.9 | 0.403 | 9.29 | 20.24 | 1770 | -- | -- |
| 59.7 | 0.36 | 7.91 | 1.24 | 0.71 | -0.733 | -- | -- | 0.208 | 9.01 | 10.3 | 9551 | -- | -- |
| 64.93 | 0.375 | 7.83 | 2.07 | -- | -1.2 | -- | 4.42 | 0.425 | -- | 20.71 | 715 | -- | -- |
| 68.29 | 0.387 | 7.96 | 0.842 | 0.73 | -- | -0.255 | -- | -0.019 | 9.13 | -- | -- | -- | -- |
| 68.51 | 0.388 | 7.96 | 0.834 | 0.731 | -- | -- | -- | -0.019 | 9.16 | -- | -- | -- | -- |
| 75.22 | 0.404 | 7.94 | 1.14 | -- | -1.17 | -- | -- | 0.176 | -- | 16.08 | 713 | -- | -- |
| 85.46 | 0.431 | 7.98 | -- | 0.658 | -0.259 | -- | -- | -0.0723 | 9.14 | 18 | 706 | -- | -- |
| 99.41 | 0.466 | 7.98 | 0.831 | -- | -- | -- | -- | -0.0153 | -- | -- | -- | -- | -- |
| 86.82 | 0.436 | 7.98 | -- | 0.731 | -- | -- | -- | -0.112 | 9.08 | -- | -- | -- | -- |
| 105.5 | 0.478 | 7.98 | -- | -- | -0.654 | -- | -- | -0.0126 | -- | 21.1 | 678 | -- | -- |
| 117.64 | 0.506 | 8 | -- | -- | -- | -- | -- | -0.107 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.17 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 11 | 46.65 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 12 | 46.76 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 15 | 46.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 2 |
| 16 | 46.80 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 4 |
| 23 | 47.03 | humidity | 90 | 14400 | > th | dose dependent | rect. | 23 | 2 |
| 24 | 47.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 2 |
| 25 | 47.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 23 | 7 |
| 26 | 47.14 | radiation | 1 | 14400 | < th | dose dependent | rect. | 19 | 11 |
| 27 | 47.15 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 4 |
| 42 | 47.28 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 7 |
| 50 | 47.52 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 51 | 47.54 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 57 | 47.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 2 |
| 58 | 47.57 | radiation | 1 | 14400 | < th | dose dependent | rect. | 18 | 4 |
| 63 | 47.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 103 | 47.84 | humidity | 90 | 14400 | > th | dose dependent | rect. | 17 | 12 |
| 170 | 48.07 | humidity | 90 | 14400 | > th | dose dependent | sin | 11 | NA |
| 192 | 48.13 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 19 |
| 221 | 48.22 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 229 | 48.25 | temperature | 20 | 1440 | > th | dose dependent | sin | 13 | NA |
| 230 | 48.25 | humidity | 80 | 43200 | > th | dose dependent | rect. | 18 | 2 |
| 234 | 48.28 | humidity | 90 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 244 | 48.30 | humidity | 90 | 14400 | < th | dose independent | rect. | 20 | 8 |
| 258 | 48.34 | wind | 9 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 273 | 48.42 | wind | 9 | 43200 | < th | dose independent | rect. | 5 | 1 |
| 279 | 48.44 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 5 |
| 299 | 48.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 6 |
| 306 | 48.49 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 312 | 48.49 | radiation | 1 | 43200 | < th | dose dependent | rect. | 23 | 12 |
| 320 | 48.50 | radiation | 1 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 322 | 48.50 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 10 |
| 327 | 48.51 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 363 | 48.54 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 380 | 48.55 | radiation | 1 | 43200 | < th | dose dependent | sin | 6 | NA |
| 382 | 48.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 5 |
| 384 | 48.55 | humidity | 90 | 43200 | > th | dose dependent | rect. | 5 | 7 |
| 419 | 48.57 | radiation | 1 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 420 | 48.57 | radiation | 1 | 43200 | < th | dose independent | rect. | 5 | 6 |
| 458 | 48.58 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 9 | 9 |
| 485 | 48.59 | humidity | 90 | 14400 | > th | dose independent | rect. | 23 | 1 |
| 488 | 48.59 | humidity | 90 | 43200 | < th | dose independent | rect. | 5 | 10 |
| 573 | 48.65 | humidity | 90 | 43200 | > th | dose independent | rect. | 5 | 19 |
| 575 | 48.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 5 | 13 |
| 576 | 48.65 | radiation | 1 | 43200 | < th | dose dependent | rect. | 17 | 19 |
| 588 | 48.67 | temperature | 25 | 4320 | < th | dose independent | rect. | 11 | 1 |
| 612 | 48.68 | wind | 3 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 624 | 48.69 | humidity | 90 | 43200 | < th | dose independent | sin | 1 | NA |
| 625 | 48.69 | radiation | 1 | 43200 | < th | dose independent | sin | 5 | NA |
| 653 | 48.69 | humidity | 80 | 43200 | > th | dose dependent | rect. | 5 | 15 |
| 660 | 48.70 | radiation | 1 | 43200 | > th | dose independent | sin | 4 | NA |
| 683 | 48.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 684 | 48.71 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 716 | 48.72 | temperature | 25 | 4320 | > th | dose independent | rect. | 11 | 1 |
| 777 | 48.75 | atmosphere | 1005 | 43200 | > th | dose independent | sin | 21 | NA |
| 793 | 48.75 | wind | 3 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 802 | 48.76 | atmosphere | 1010 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 875 | 48.77 | humidity | 90 | 43200 | > th | dose dependent | sin | 1 | NA |
| 882 | 48.78 | humidity | 90 | 14400 | > th | dose independent | sin | 12 | NA |
| 895 | 48.78 | radiation | 1 | 14400 | < th | dose dependent | sin | 12 | NA |
| 899 | 48.79 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 916 | 48.80 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 13 | 4 |
| 925 | 48.81 | humidity | 90 | 43200 | < th | dose independent | sin | 20 | NA |
| 927 | 48.81 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 929 | 48.81 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 9 | 9 |
| 950 | 48.82 | wind | 3 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 971 | 48.83 | radiation | 1 | 43200 | > th | dose independent | rect. | 6 | 3 |
| 972 | 48.83 | radiation | 1 | 43200 | < th | dose independent | rect. | 6 | 3 |
| 981 | 48.83 | atmosphere | 995 | 43200 | > th | dose dependent | rect. | 9 | 1 |