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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0558900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Proteinase inhibitor I9, subtilisin propeptide domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.34 (0.0178) R2 : 0.0074
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0692 (0.0375) R2dN8 : 0.00955 R2N8 : 0.0074
σ : 0.336
deviance : 51.68
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.35 0.309 3.23 1.08 0.225 0.496 0.518 -3.81 0.0128 10.2 29.99 1449 -- --
44.06 0.309 3.3 0.509 0.244 0.371 0.63 -- 0.0551 9.77 19.2 7993 -- --
44.25 0.31 3.23 1.08 0.233 0.505 -- -3.8 0.0108 9.28 29.93 1473 -- --
44.7 0.311 3.3 0.52 0.237 0.392 -- -- 0.0443 9.26 18.5 7915 -- --
47.38 0.321 3.23 1.1 -- 0.506 -- -3.74 0.0111 -- 29.92 1368 -- --
45.36 0.316 3.32 0.259 0.239 -- 0.493 -- -0.0395 10 -- -- -- --
46.18 0.318 3.32 0.276 0.245 -- -- -- -0.0397 9.25 -- -- -- --
48.06 0.323 3.31 0.526 -- 0.397 -- -- 0.0528 -- 18.6 7923 -- --
47.67 0.322 3.32 -- 0.239 0.113 -- -- -0.0342 9.08 22.5 2311 -- --
49.68 0.329 3.33 0.275 -- -- -- -- -0.0386 -- -- -- -- --
48.19 0.325 3.33 -- 0.245 -- -- -- -0.0705 9.16 -- -- -- --
50.87 0.332 3.33 -- -- 0.138 -- -- -0.0229 -- 22.6 2271 -- --
51.68 0.336 3.34 -- -- -- -- -- -0.0692 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.09 atmosphere 1005.0 10 > th dose dependent rect. 2 2
4 40.43 atmosphere 995.0 720 > th dose independent rect. 23 16
5 40.64 atmosphere 995.0 10 > th dose independent rect. 3 23
8 40.78 humidity 50.0 720 > th dose independent rect. 3 8
12 41.00 radiation 1.0 43200 < th dose dependent rect. 3 1
13 41.09 temperature 25.0 90 > th dose independent rect. 1 1
15 41.17 precipitation 0.1 720 < th dose independent rect. 15 8
16 41.17 precipitation 0.1 720 < th dose dependent rect. 15 8
17 41.20 atmosphere 1010.0 10 < th dose dependent rect. 2 1
22 41.26 temperature 10.0 720 > th dose independent rect. 15 8
23 41.26 temperature 10.0 720 > th dose independent rect. 23 16
24 41.28 temperature 25.0 90 > th dose dependent rect. 1 2
26 41.32 temperature 10.0 720 > th dose independent rect. 3 8
27 41.32 atmosphere 995.0 720 > th dose independent rect. 3 8
28 41.32 temperature 10.0 720 > th dose independent rect. 11 16
31 41.35 wind 3.0 90 < th dose independent rect. 2 1
32 41.37 atmosphere 1005.0 90 > th dose independent rect. 2 1
34 41.46 wind 3.0 10 < th dose independent rect. 2 1
38 41.47 precipitation 0.1 720 < th dose independent rect. 11 16
39 41.47 wind 7.0 10 < th dose dependent rect. 2 1
40 41.47 precipitation 0.1 720 < th dose dependent rect. 11 16
44 41.49 wind 1.0 14400 > th dose independent rect. 5 2
45 41.49 wind 9.0 720 < th dose independent rect. 3 8
46 41.49 wind 5.0 90 < th dose dependent rect. 2 1
47 41.49 humidity 90.0 30 > th dose dependent rect. 2 1
54 41.50 temperature 10.0 10 > th dose independent rect. 2 1
56 41.50 temperature 30.0 10 < th dose independent rect. 2 1
57 41.50 humidity 50.0 10 > th dose independent rect. 2 1
60 41.50 atmosphere 995.0 10 > th dose independent rect. 2 1
61 41.50 atmosphere 1010.0 10 < th dose independent rect. 2 1
63 41.50 radiation 1.0 10 < th dose independent rect. 2 1
68 41.50 precipitation 0.1 10 < th dose independent rect. 2 1
69 41.50 temperature 10.0 10 > th dose independent rect. 3 23
71 41.50 temperature 10.0 10 > th dose dependent rect. 2 1
72 41.50 radiation 1.0 10 < th dose dependent rect. 2 1
77 41.50 precipitation 0.1 10 < th dose dependent rect. 2 1
78 41.51 wind 1.0 30 > th dose independent rect. 2 1
102 41.51 temperature 30.0 30 < th dose dependent rect. 2 1
103 41.51 humidity 50.0 10 > th dose dependent rect. 2 1
112 41.52 humidity 90.0 30 > th dose independent rect. 2 1
123 41.52 wind 1.0 14400 < th dose dependent rect. 5 2
144 41.58 wind 1.0 14400 < th dose independent rect. 5 2
149 41.59 wind 1.0 14400 < th dose dependent rect. 4 4
154 41.62 radiation 1.0 4320 < th dose dependent rect. 3 1
156 41.62 wind 1.0 14400 < th dose dependent rect. 4 7
157 41.63 humidity 90.0 90 < th dose independent rect. 2 1
162 41.66 wind 1.0 14400 > th dose independent rect. 4 7
163 41.66 wind 1.0 14400 < th dose independent rect. 4 7
164 41.66 precipitation 0.1 30 < th dose independent rect. 3 23
169 41.66 precipitation 0.1 30 < th dose dependent rect. 3 23
170 41.67 wind 9.0 1440 < th dose independent rect. 3 1
171 41.67 temperature 10.0 1440 > th dose independent rect. 3 1
174 41.67 temperature 30.0 1440 < th dose independent rect. 3 1
178 41.67 humidity 50.0 1440 > th dose independent rect. 3 1
187 41.67 atmosphere 995.0 1440 > th dose independent rect. 3 1
188 41.67 radiation 1.0 1440 < th dose independent rect. 3 1
209 41.67 temperature 10.0 1440 > th dose independent rect. 4 23
223 41.68 wind 1.0 14400 > th dose independent rect. 4 5
227 41.69 wind 1.0 14400 < th dose independent rect. 4 4
239 41.73 humidity 50.0 30 > th dose independent rect. 3 23
244 41.75 wind 9.0 30 < th dose independent rect. 3 23
245 41.76 atmosphere 995.0 720 > th dose independent rect. 7 8
246 41.76 wind 1.0 14400 < th dose dependent rect. 2 9
252 41.81 atmosphere 1015.0 720 < th dose independent rect. 3 8
257 41.82 wind 5.0 4320 < th dose dependent rect. 5 2
260 41.83 humidity 90.0 90 < th dose independent rect. 1 7
263 41.85 radiation 40.0 720 < th dose independent rect. 15 8
283 41.86 wind 1.0 14400 < th dose independent rect. 2 11
292 41.87 humidity 50.0 30 > th dose independent rect. 2 14
301 41.90 wind 1.0 14400 < th dose independent rect. 2 9
307 41.91 wind 1.0 14400 > th dose independent rect. 2 11
310 41.92 wind 1.0 14400 > th dose independent rect. 2 9
323 41.96 wind 1.0 4320 > th dose dependent rect. 5 2
330 41.98 wind 1.0 14400 > th dose independent rect. 2 7
331 41.98 wind 9.0 720 < th dose independent rect. 15 8
335 41.99 wind 1.0 14400 < th dose independent rect. 2 7
359 42.03 humidity 90.0 90 < th dose dependent rect. 2 5
362 42.04 wind 1.0 14400 > th dose independent rect. 8 1
369 42.04 wind 3.0 30 < th dose dependent rect. 2 6
374 42.05 wind 1.0 14400 > th dose independent rect. 21 11
383 42.07 wind 1.0 14400 > th dose independent rect. 1 2
389 42.08 humidity 70.0 14400 < th dose independent rect. 8 1
392 42.08 wind 1.0 14400 > th dose independent rect. 21 14
395 42.09 wind 1.0 14400 > th dose independent sin 7 NA
414 42.11 wind 1.0 14400 > th dose independent rect. 21 16
416 42.11 wind 1.0 14400 < th dose dependent sin 7 NA
420 42.12 wind 1.0 14400 < th dose independent sin 6 NA
450 42.14 wind 1.0 14400 < th dose dependent rect. 20 15
452 42.15 radiation 10.0 30 > th dose independent rect. 7 1
454 42.15 wind 9.0 720 < th dose independent rect. 19 8
455 42.15 wind 1.0 14400 < th dose independent rect. 23 9
462 42.15 temperature 25.0 720 > th dose dependent rect. 3 6
472 42.16 precipitation 0.1 720 < th dose independent rect. 3 8
483 42.16 wind 1.0 14400 < th dose independent rect. 21 14
487 42.16 precipitation 0.1 720 < th dose dependent rect. 3 8
488 42.16 wind 1.0 14400 < th dose dependent rect. 20 12
492 42.17 wind 1.0 14400 < th dose independent rect. 21 11
495 42.17 wind 1.0 14400 < th dose independent rect. 21 16
522 42.19 temperature 25.0 720 > th dose independent rect. 8 1
533 42.19 temperature 20.0 720 > th dose dependent rect. 3 1
556 42.21 wind 1.0 14400 < th dose independent rect. 1 2
581 42.23 humidity 70.0 14400 > th dose independent rect. 8 1
592 42.24 wind 1.0 14400 < th dose independent rect. 8 1
624 42.27 humidity 70.0 14400 > th dose independent rect. 4 5
629 42.27 radiation 40.0 720 < th dose independent rect. 15 16
651 42.28 temperature 15.0 720 > th dose independent rect. 3 16
656 42.29 humidity 90.0 720 < th dose independent rect. 1 3
657 42.29 temperature 10.0 720 > th dose independent rect. 19 8
659 42.29 temperature 30.0 720 < th dose independent rect. 19 8
660 42.29 humidity 50.0 720 > th dose independent rect. 19 8
661 42.29 atmosphere 995.0 720 > th dose independent rect. 19 8
662 42.29 radiation 1.0 720 < th dose independent rect. 19 8
669 42.29 atmosphere 1015.0 720 < th dose independent rect. 3 16
675 42.29 radiation 10.0 720 < th dose dependent rect. 19 8
701 42.30 temperature 10.0 30 > th dose dependent rect. 3 23
717 42.32 temperature 25.0 720 > th dose dependent rect. 8 1
734 42.33 radiation 20.0 30 < th dose dependent rect. 3 23
758 42.36 temperature 15.0 720 > th dose independent rect. 7 8
762 42.36 humidity 90.0 4320 < th dose dependent rect. 11 1
770 42.37 atmosphere 1015.0 720 < th dose independent rect. 7 8
772 42.37 temperature 10.0 720 > th dose independent rect. 15 16
786 42.38 temperature 20.0 720 > th dose independent rect. 3 2
798 42.39 wind 9.0 720 < th dose independent rect. 15 16
810 42.40 humidity 50.0 4320 > th dose dependent rect. 11 1
832 42.42 humidity 90.0 90 < th dose dependent rect. 2 1
845 42.43 wind 1.0 14400 < th dose dependent rect. 8 1
850 42.44 temperature 25.0 720 > th dose independent rect. 4 5
852 42.44 humidity 80.0 10 < th dose independent rect. 23 9
853 42.44 atmosphere 1000.0 10 > th dose independent rect. 16 10
898 42.46 radiation 10.0 30 < th dose independent rect. 3 23
907 42.47 humidity 80.0 10 < th dose independent rect. 7 1
960 42.50 wind 3.0 30 < th dose independent rect. 2 6
979 42.51 precipitation 0.1 720 < th dose independent rect. 23 16
991 42.51 atmosphere 1000.0 30 > th dose dependent rect. 2 6
992 42.51 precipitation 0.1 720 < th dose dependent rect. 23 16
995 42.52 humidity 80.0 4320 > th dose independent rect. 7 6
997 42.52 temperature 20.0 720 > th dose independent rect. 3 12