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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0557800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ra.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.32 (0.0358) R2 : 0.159
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.819 (0.0886) R2dC : 0.159 R2C : 0.157
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0565 (0.0753) R2dN8 : 0.00134 R2N8 : -1e-04
σ : 0.675
deviance : 208.25
__
_____
C
peak time of C : 9.27
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
181.67 0.633 3.28 0.653 0.735 1.14 0.131 0.517 0.137 9.71 19.33 428 -- --
182.17 0.629 3.27 0.706 0.738 1.04 0.215 -- 0.15 9.67 19.34 439 -- --
181.64 0.628 3.29 0.649 0.755 1.2 -- 0.7 0.13 9.75 19.21 386 -- --
182.35 0.629 3.27 0.714 0.738 1.04 -- -- 0.149 9.66 19.35 438 -- --
210.7 0.676 3.3 0.665 -- 1.25 -- 0.632 0.155 -- 19.5 546 -- --
204.48 0.67 3.31 0.354 0.82 -- 0.279 -- -0.0162 9.33 -- -- -- --
204.76 0.67 3.31 0.364 0.819 -- -- -- -0.016 9.3 -- -- -- --
211.33 0.677 3.28 0.786 -- 1.25 -- -- 0.191 -- 19.38 569 -- --
194.38 0.649 3.3 -- 0.74 0.769 -- -- 0.0456 9.45 19.3 490 -- --
243.87 0.73 3.33 0.36 -- -- -- -- -0.0126 -- -- -- -- --
208.25 0.675 3.32 -- 0.819 -- -- -- -0.0565 9.27 -- -- -- --
225.46 0.699 3.31 -- -- 0.906 -- -- 0.0719 -- 19.66 561 -- --
247.29 0.734 3.34 -- -- -- -- -- -0.0525 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 179.93 temperature 20 270 > th dose independent rect. 24 15
2 180.00 temperature 20 270 < th dose independent sin 6 NA
6 180.23 temperature 20 270 < th dose dependent rect. 23 10
7 180.25 wind 9 43200 > th dose independent rect. 17 14
10 180.35 wind 9 43200 > th dose dependent rect. 17 13
12 180.38 wind 9 43200 < th dose independent rect. 17 14
14 180.47 temperature 20 270 > th dose independent rect. 21 22
16 180.53 wind 9 43200 > th dose dependent rect. 16 15
23 180.72 temperature 20 270 > th dose independent sin 6 NA
40 181.01 wind 9 43200 > th dose dependent rect. 17 7
43 181.08 temperature 20 270 < th dose independent rect. 23 16
46 181.14 temperature 20 270 < th dose dependent rect. 1 8
58 181.33 wind 9 43200 > th dose independent rect. 17 7
70 181.46 temperature 20 270 < th dose dependent sin 7 NA
95 181.76 wind 9 43200 < th dose independent rect. 17 7
104 181.88 wind 9 43200 > th dose independent sin 12 NA
105 181.92 wind 9 43200 < th dose independent sin 12 NA
133 182.22 wind 7 43200 > th dose dependent sin 12 NA
145 182.37 wind 9 43200 < th dose independent rect. 20 10
152 182.41 humidity 60 14400 < th dose dependent rect. 17 16
153 182.42 temperature 20 270 < th dose independent rect. 1 14
185 182.58 wind 9 43200 > th dose dependent rect. 20 10
194 182.61 temperature 30 720 < th dose dependent rect. 19 14
196 182.62 temperature 20 270 < th dose independent rect. 1 10
213 182.70 temperature 20 270 < th dose dependent rect. 23 18
225 182.74 wind 9 43200 > th dose dependent rect. 20 3
248 182.82 wind 7 43200 < th dose independent rect. 20 1
249 182.82 wind 7 43200 < th dose independent rect. 18 3
267 182.87 wind 9 43200 > th dose dependent rect. 17 4
270 182.88 wind 7 43200 > th dose independent rect. 18 3
271 182.88 temperature 20 720 > th dose independent rect. 7 21
296 182.99 humidity 60 14400 > th dose independent rect. 18 8
299 183.00 humidity 60 14400 > th dose independent rect. 18 5
305 183.01 humidity 60 14400 > th dose independent rect. 18 2
318 183.03 wind 9 43200 > th dose independent rect. 20 5
336 183.09 wind 7 43200 > th dose independent rect. 20 1
367 183.17 temperature 30 1440 < th dose dependent rect. 7 1
372 183.18 temperature 10 720 > th dose dependent rect. 17 16
386 183.23 temperature 15 1440 > th dose dependent rect. 7 2
425 183.33 temperature 20 720 > th dose independent rect. 17 19
434 183.35 temperature 10 720 > th dose dependent rect. 21 7
467 183.45 humidity 60 14400 < th dose dependent rect. 17 3
489 183.49 temperature 20 720 > th dose independent rect. 17 11
490 183.49 wind 7 43200 > th dose dependent rect. 20 1
495 183.51 humidity 60 14400 < th dose independent rect. 18 2
500 183.52 humidity 50 14400 < th dose dependent rect. 16 19
536 183.64 radiation 10 14400 < th dose independent rect. 17 13
576 183.74 radiation 10 14400 < th dose independent rect. 17 9
581 183.75 radiation 10 14400 < th dose independent rect. 17 6
595 183.78 radiation 10 14400 < th dose independent rect. 17 2
634 183.85 temperature 30 720 < th dose dependent sin 10 NA
648 183.89 humidity 60 14400 < th dose dependent rect. 18 1
723 184.06 temperature 25 720 < th dose dependent rect. 20 9
744 184.13 radiation 1 14400 > th dose independent rect. 17 1
780 184.20 temperature 20 720 > th dose independent rect. 20 16
805 184.24 temperature 25 720 < th dose dependent rect. 20 7
826 184.28 temperature 20 720 < th dose independent rect. 21 4
840 184.31 temperature 20 270 < th dose dependent rect. 1 20
878 184.40 temperature 20 720 > th dose independent rect. 21 7
896 184.43 temperature 15 720 > th dose dependent sin 11 NA
917 184.46 temperature 20 720 < th dose independent rect. 18 18