Os04g0556100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0556100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 197.74 | 0.661 | 3.13 | 0.267 | 0.58 | 0.663 | -0.154 | 0.899 | 0.489 | 23.6 | 21.45 | 1577 | -- | -- |
| 199.23 | 0.657 | 3.16 | 0.064 | 0.585 | 0.591 | -0.0686 | -- | 0.449 | 23.4 | 21.8 | 1598 | -- | -- |
| 197.84 | 0.655 | 3.13 | 0.272 | 0.58 | 0.663 | -- | 0.897 | 0.489 | 23.6 | 21.45 | 1577 | -- | -- |
| 199.15 | 0.657 | 3.16 | 0.0401 | 0.573 | 0.593 | -- | -- | 0.426 | 23.6 | 21.8 | 1578 | -- | -- |
| 217.56 | 0.687 | 3.13 | 0.213 | -- | 0.62 | -- | 0.488 | 0.471 | -- | 21.8 | 1075 | -- | -- |
| 209.9 | 0.679 | 3.12 | 0.284 | 0.581 | -- | -0.183 | -- | 0.608 | 23.6 | -- | -- | -- | -- |
| 210.04 | 0.679 | 3.12 | 0.291 | 0.582 | -- | -- | -- | 0.608 | 23.6 | -- | -- | -- | -- |
| 210.77 | 0.676 | 3.16 | 0.0801 | -- | 0.708 | -- | -- | 0.353 | -- | 24.9 | 893 | -- | -- |
| 199.19 | 0.657 | 3.16 | -- | 0.576 | 0.6 | -- | -- | 0.421 | 23.6 | 21.8 | 1578 | -- | -- |
| 231.34 | 0.711 | 3.11 | 0.308 | -- | -- | -- | -- | 0.615 | -- | -- | -- | -- | -- |
| 212.28 | 0.682 | 3.13 | -- | 0.586 | -- | -- | -- | 0.576 | 23.7 | -- | -- | -- | -- |
| 210.93 | 0.676 | 3.17 | -- | -- | 0.722 | -- | -- | 0.339 | -- | 24.89 | 893 | -- | -- |
| 233.84 | 0.714 | 3.11 | -- | -- | -- | -- | -- | 0.581 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 194.95 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 8 |
| 11 | 195.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 1 |
| 24 | 195.89 | temperature | 20 | 10 | > th | dose independent | rect. | 17 | 9 |
| 31 | 196.10 | temperature | 25 | 720 | < th | dose dependent | sin | 20 | NA |
| 37 | 196.22 | temperature | 20 | 10 | > th | dose independent | sin | 12 | NA |
| 44 | 196.39 | temperature | 25 | 270 | < th | dose dependent | rect. | 14 | 14 |
| 54 | 196.56 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 11 |
| 56 | 196.60 | temperature | 20 | 10 | < th | dose independent | rect. | 19 | 13 |
| 72 | 196.71 | radiation | 10 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 79 | 196.78 | temperature | 20 | 10 | < th | dose independent | sin | 12 | NA |
| 80 | 196.78 | atmosphere | 1000 | 10 | < th | dose independent | rect. | 1 | 1 |
| 87 | 196.78 | atmosphere | 1000 | 10 | < th | dose dependent | rect. | 1 | 1 |
| 94 | 196.78 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 9 |
| 105 | 196.88 | temperature | 20 | 10 | > th | dose independent | rect. | 18 | 11 |
| 106 | 196.89 | temperature | 25 | 270 | < th | dose dependent | sin | 15 | NA |
| 115 | 196.98 | humidity | 50 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 116 | 197.00 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 2 |
| 118 | 197.00 | radiation | 40 | 43200 | > th | dose independent | rect. | 13 | 19 |
| 151 | 197.16 | radiation | 20 | 43200 | > th | dose independent | rect. | 13 | 4 |
| 166 | 197.20 | radiation | 20 | 43200 | > th | dose independent | sin | 14 | NA |
| 168 | 197.21 | radiation | 20 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 205 | 197.35 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 11 |
| 287 | 197.57 | humidity | 70 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 324 | 197.66 | humidity | 60 | 43200 | < th | dose dependent | rect. | 12 | 3 |
| 346 | 197.72 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 5 |
| 393 | 197.80 | radiation | 30 | 43200 | < th | dose dependent | rect. | 14 | 2 |
| 408 | 197.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 2 | 15 |
| 410 | 197.87 | humidity | 60 | 43200 | < th | dose dependent | rect. | 21 | 20 |
| 414 | 197.88 | humidity | 60 | 43200 | < th | dose dependent | rect. | 5 | 12 |
| 423 | 197.89 | wind | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |
| 465 | 197.97 | temperature | 25 | 10 | < th | dose dependent | sin | 11 | NA |
| 474 | 197.99 | humidity | 60 | 43200 | < th | dose dependent | sin | 0 | NA |
| 476 | 197.99 | radiation | 1 | 43200 | > th | dose dependent | rect. | 14 | 2 |
| 481 | 198.00 | temperature | 25 | 720 | > th | dose independent | rect. | 13 | 6 |
| 482 | 198.00 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 14 |
| 488 | 198.02 | temperature | 20 | 10 | < th | dose independent | rect. | 16 | 16 |
| 522 | 198.07 | humidity | 60 | 43200 | < th | dose dependent | rect. | 11 | 23 |
| 545 | 198.09 | humidity | 70 | 43200 | < th | dose dependent | rect. | 7 | 4 |
| 563 | 198.11 | humidity | 70 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 564 | 198.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 7 |
| 570 | 198.11 | humidity | 70 | 43200 | < th | dose dependent | rect. | 24 | 11 |
| 572 | 198.11 | temperature | 25 | 10 | < th | dose dependent | rect. | 20 | 12 |
| 575 | 198.11 | radiation | 20 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 580 | 198.12 | humidity | 60 | 43200 | < th | dose dependent | no | NA | NA |
| 584 | 198.12 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 7 |
| 621 | 198.12 | humidity | 60 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 654 | 198.14 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 4 |
| 713 | 198.17 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 17 |
| 760 | 198.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 767 | 198.21 | radiation | 20 | 43200 | < th | dose dependent | sin | 16 | NA |
| 811 | 198.23 | radiation | 10 | 43200 | < th | dose dependent | rect. | 15 | 20 |
| 840 | 198.25 | humidity | 60 | 43200 | < th | dose independent | rect. | 11 | 1 |
| 875 | 198.27 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 16 |
| 888 | 198.28 | temperature | 20 | 10 | < th | dose independent | rect. | 14 | 18 |
| 914 | 198.30 | temperature | 25 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 944 | 198.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 18 | 14 |
| 977 | 198.35 | humidity | 60 | 43200 | > th | dose independent | rect. | 8 | 4 |
| 991 | 198.36 | humidity | 60 | 43200 | > th | dose independent | rect. | 22 | 14 |