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Os04g0555800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Zinc finger, CCHC-type domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11.4 (0.0173) R2 : 0.379
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.724 (0.0442) R2dC : 0.365 R2C : 0.365
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.102 (0.0364) R2dN8 : 0.0137 R2N8 : 0.0137
σ : 0.326
deviance : 48.57
__
_____
C
peak time of C : 16.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
43.04 0.308 11.4 -0.077 0.605 0.628 -0.0107 0.718 -0.13 17.2 17.33 75 -- --
43.69 0.308 11.4 -0.0768 0.61 0.569 0.0807 -- -0.13 17.3 12.57 70 -- --
43.02 0.305 11.4 -0.0768 0.604 0.634 -- 0.694 -0.13 17.3 16.6 73 -- --
43.69 0.308 11.4 -0.0666 0.599 0.57 -- -- -0.129 17.3 11.56 72 -- --
58.13 0.355 11.4 -0.101 -- 0.706 -- 0.26 -0.165 -- -15.07 220 -- --
48.45 0.326 11.4 -0.0667 0.723 -- -0.00766 -- -0.109 16.1 -- -- -- --
48.45 0.326 11.4 -0.0668 0.723 -- -- -- -0.109 16.1 -- -- -- --
58.28 0.356 11.4 -0.101 -- 0.702 -- -- -0.166 -- -15.33 221 -- --
43.81 0.308 11.4 -- 0.601 0.568 -- -- -0.121 17.3 12.1 72 -- --
76.86 0.41 11.4 -0.0961 -- -- -- -- -0.128 -- -- -- -- --
48.57 0.326 11.4 -- 0.724 -- -- -- -0.102 16.1 -- -- -- --
58.55 0.356 11.4 -- -- 0.702 -- -- -0.155 -- -23.7 221 -- --
77.1 0.41 11.4 -- -- -- -- -- -0.118 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 33.89 temperature 10.0 10 > th dose dependent rect. 15 18
5 34.45 radiation 40.0 90 < th dose independent rect. 13 19
8 34.83 temperature 10.0 10 > th dose dependent rect. 2 7
11 34.98 humidity 50.0 270 > th dose independent rect. 9 1
12 34.99 radiation 40.0 10 < th dose independent rect. 12 21
13 35.00 wind 9.0 270 < th dose independent rect. 9 1
15 35.01 precipitation 0.1 270 < th dose independent rect. 9 1
16 35.01 precipitation 0.1 270 < th dose dependent rect. 9 1
17 35.03 temperature 10.0 270 > th dose independent rect. 9 1
18 35.03 atmosphere 995.0 270 > th dose independent rect. 9 1
19 35.03 atmosphere 1015.0 270 < th dose independent rect. 9 1
20 35.03 temperature 10.0 10 > th dose independent rect. 9 6
22 35.03 atmosphere 995.0 10 > th dose independent rect. 9 6
23 35.03 atmosphere 1015.0 10 < th dose independent rect. 9 6
24 35.03 precipitation 0.1 10 < th dose independent rect. 9 6
25 35.03 temperature 10.0 10 > th dose independent rect. 15 18
26 35.03 temperature 10.0 270 > th dose independent rect. 10 23
27 35.03 precipitation 0.1 10 < th dose dependent rect. 9 6
31 35.10 wind 1.0 10 > th dose independent rect. 9 6
34 35.13 wind 9.0 10 < th dose independent rect. 9 6
35 35.13 radiation 1.0 10 > th dose independent rect. 9 6
38 35.14 atmosphere 1015.0 10 < th dose independent rect. 15 18
39 35.17 precipitation 0.1 90 < th dose independent rect. 8 6
40 35.17 precipitation 0.1 90 < th dose dependent rect. 8 6
53 35.28 wind 1.0 270 > th dose independent rect. 9 1
56 35.30 precipitation 0.1 10 < th dose independent rect. 15 18
57 35.30 precipitation 0.1 10 < th dose dependent rect. 15 18
62 35.34 temperature 10.0 1440 > th dose independent rect. 10 6
68 35.34 temperature 10.0 1440 > th dose independent rect. 16 18
71 35.36 radiation 40.0 10 < th dose independent rect. 15 18
75 35.37 temperature 10.0 270 > th dose dependent rect. 9 1
76 35.38 radiation 1.0 270 > th dose independent rect. 9 1
79 35.41 wind 9.0 10 < th dose independent rect. 15 18
86 35.49 humidity 50.0 90 > th dose independent rect. 8 6
100 35.55 humidity 50.0 10 > th dose independent rect. 9 6
107 35.60 wind 9.0 10 < th dose independent rect. 9 17
112 35.65 wind 7.0 10 < th dose independent rect. 2 7
129 35.75 atmosphere 995.0 10 > th dose independent rect. 9 17
133 35.77 wind 9.0 270 < th dose dependent rect. 8 2
136 35.78 temperature 10.0 10 > th dose independent rect. 2 7
138 35.78 temperature 30.0 10 < th dose independent rect. 2 7
139 35.78 humidity 50.0 10 > th dose independent rect. 2 7
141 35.78 atmosphere 995.0 10 > th dose independent rect. 2 7
142 35.78 atmosphere 1015.0 10 < th dose independent rect. 2 7
144 35.78 temperature 10.0 10 > th dose independent rect. 9 17
148 35.80 precipitation 0.1 10 < th dose independent rect. 2 7
149 35.80 precipitation 0.1 10 < th dose dependent rect. 2 7
150 35.81 wind 9.0 270 < th dose independent rect. 6 7
165 35.85 humidity 50.0 270 > th dose independent rect. 6 7
170 35.89 humidity 90.0 10 < th dose independent rect. 9 6
172 35.89 precipitation 0.1 270 < th dose independent rect. 6 7
174 35.89 precipitation 0.1 270 < th dose dependent rect. 6 7
179 35.91 temperature 10.0 270 > th dose independent rect. 6 7
180 35.91 atmosphere 995.0 270 > th dose independent rect. 6 7
181 35.91 atmosphere 1015.0 270 < th dose independent rect. 6 7
185 35.92 precipitation 0.1 10 < th dose independent rect. 9 17
188 35.92 precipitation 0.1 10 < th dose dependent rect. 9 17
223 36.06 temperature 10.0 1440 > th dose independent rect. 3 7
226 36.06 atmosphere 995.0 1440 > th dose independent rect. 3 7
227 36.06 temperature 10.0 1440 > th dose independent rect. 10 17
236 36.11 radiation 40.0 10 < th dose independent rect. 2 7
259 36.17 wind 9.0 270 < th dose dependent rect. 7 4
266 36.19 atmosphere 995.0 10 > th dose independent rect. 15 18
294 36.32 temperature 10.0 10 > th dose dependent rect. 9 6
301 36.37 temperature 10.0 90 > th dose dependent rect. 8 5
316 36.42 wind 9.0 270 < th dose independent rect. 17 9
318 36.43 precipitation 0.1 270 < th dose independent rect. 10 22
319 36.43 precipitation 0.1 270 < th dose dependent rect. 10 22
326 36.48 radiation 10.0 270 < th dose independent rect. 17 9
343 36.52 temperature 10.0 270 > th dose independent rect. 17 9
347 36.52 temperature 10.0 270 > th dose independent rect. 2 15
348 36.52 atmosphere 1015.0 270 < th dose independent rect. 2 15
350 36.52 temperature 10.0 270 > th dose dependent rect. 23 8
355 36.53 radiation 40.0 270 < th dose dependent rect. 17 9
357 36.53 atmosphere 1015.0 30 < th dose dependent rect. 15 18
360 36.54 humidity 50.0 30 > th dose independent rect. 9 17
372 36.55 temperature 10.0 270 > th dose independent rect. 11 20
402 36.64 radiation 1.0 270 > th dose independent rect. 6 7
403 36.64 precipitation 0.1 270 < th dose independent rect. 2 15
404 36.64 humidity 50.0 10 > th dose independent rect. 15 18
406 36.64 precipitation 0.1 270 < th dose dependent rect. 2 15
421 36.69 atmosphere 995.0 270 > th dose independent rect. 17 9
425 36.70 humidity 50.0 270 > th dose independent rect. 17 9
431 36.73 wind 9.0 90 < th dose dependent rect. 2 6
432 36.73 wind 9.0 10 < th dose dependent rect. 2 7
456 36.76 atmosphere 995.0 1440 > th dose independent rect. 10 4
470 36.76 precipitation 0.1 270 < th dose independent rect. 11 20
472 36.76 precipitation 0.1 270 < th dose dependent rect. 11 20
494 36.82 precipitation 0.1 270 < th dose independent rect. 17 9
498 36.82 precipitation 0.1 270 < th dose dependent rect. 17 9
525 36.91 wind 9.0 270 < th dose independent rect. 10 22
527 36.92 atmosphere 1015.0 270 < th dose independent rect. 11 20
565 37.01 wind 9.0 270 < th dose independent rect. 7 16
591 37.09 wind 9.0 270 < th dose independent rect. 11 20
596 37.10 wind 7.0 270 < th dose independent rect. 23 8
610 37.12 wind 9.0 270 < th dose dependent rect. 6 7
613 37.13 radiation 10.0 270 < th dose independent rect. 1 6
614 37.13 atmosphere 1015.0 270 < th dose independent rect. 23 8
632 37.17 wind 9.0 270 < th dose independent rect. 2 15
639 37.19 humidity 90.0 270 < th dose independent rect. 9 1
659 37.22 precipitation 0.1 270 < th dose independent rect. 23 8
661 37.22 wind 9.0 270 < th dose independent rect. 5 22
663 37.22 precipitation 0.1 270 < th dose dependent rect. 23 8
667 37.23 radiation 20.0 270 < th dose independent rect. 23 8
687 37.25 temperature 15.0 270 > th dose independent rect. 23 8
725 37.30 temperature 30.0 270 < th dose independent rect. 23 8
726 37.30 humidity 50.0 270 > th dose independent rect. 23 8
729 37.30 atmosphere 995.0 270 > th dose independent rect. 23 8
738 37.30 radiation 1.0 90 > th dose independent rect. 13 19
739 37.30 wind 9.0 270 < th dose independent rect. 6 20
749 37.32 atmosphere 1015.0 1440 < th dose independent rect. 4 6
750 37.32 humidity 50.0 270 > th dose independent rect. 19 16
760 37.34 temperature 10.0 270 > th dose independent rect. 11 8
761 37.34 atmosphere 1015.0 270 < th dose independent rect. 11 8
762 37.34 temperature 10.0 270 > th dose independent rect. 19 16
763 37.34 atmosphere 995.0 270 > th dose independent rect. 19 16
775 37.36 wind 9.0 270 < th dose independent rect. 19 16
800 37.42 radiation 40.0 270 < th dose dependent rect. 1 6
854 37.52 wind 1.0 30 > th dose independent rect. 9 18
870 37.54 atmosphere 995.0 30 > th dose dependent rect. 9 17
873 37.55 wind 7.0 270 < th dose independent rect. 3 2
874 37.55 radiation 10.0 270 < th dose independent rect. 2 4
896 37.56 precipitation 0.1 270 < th dose independent rect. 11 8
902 37.56 precipitation 0.1 270 < th dose dependent rect. 11 8
924 37.58 atmosphere 1015.0 270 < th dose independent rect. 10 22
930 37.59 precipitation 0.1 270 < th dose independent rect. 3 2
933 37.59 precipitation 0.1 270 < th dose dependent rect. 3 2
945 37.61 precipitation 0.1 270 < th dose independent rect. 19 16
951 37.61 precipitation 0.1 270 < th dose dependent rect. 19 16
957 37.62 radiation 40.0 270 < th dose dependent rect. 23 8
960 37.63 temperature 10.0 270 > th dose independent rect. 3 2
962 37.63 temperature 30.0 270 < th dose independent rect. 3 2
963 37.63 humidity 50.0 270 > th dose independent rect. 3 2
966 37.63 atmosphere 995.0 270 > th dose independent rect. 3 2
967 37.63 atmosphere 1010.0 270 < th dose independent rect. 3 2
969 37.63 radiation 20.0 270 < th dose independent rect. 3 2
973 37.63 temperature 10.0 270 > th dose independent rect. 5 22
974 37.63 radiation 40.0 270 < th dose dependent rect. 3 2
989 37.64 temperature 10.0 270 > th dose independent rect. 6 20
991 37.64 radiation 1.0 270 > th dose dependent rect. 9 1
992 37.64 radiation 20.0 270 < th dose dependent rect. 3 2
994 37.64 radiation 30.0 270 < th dose dependent rect. 2 4
997 37.65 radiation 1.0 270 < th dose independent rect. 3 2