Os04g0553500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pectinesterase family protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0553500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Pectinesterase family protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = > th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 39.65 | 0.293 | 2.82 | -0.146 | 0.000262 | 1.68 | 0.186 | -17.3 | 0.067 | 15.1 | 1 | 10 | 18 | 1 |
| 44.02 | 0.311 | 2.82 | -0.0877 | 0.000823 | 4.13 | 0.135 | -- | 0.073 | 11.3 | 1 | 10 | 18 | 1 |
| 39.76 | 0.296 | 2.81 | -0.0974 | 0.00933 | 0.727 | -- | -9.34 | 0.0679 | 20 | 1 | 10 | 18 | 1 |
| 40.01 | 0.295 | 2.82 | -0.0939 | 0.0281 | 4.99 | -- | -- | 0.0573 | 23.9 | 3.37 | 11 | 18 | 1.89 |
| 39.77 | 0.295 | 2.81 | -0.0973 | -- | 0.744 | -- | -9.31 | 0.0678 | -- | 1 | 10 | 18 | 1 |
| 63.92 | 0.375 | 2.83 | -0.159 | 0.0578 | -- | -0.393 | -- | 0.0446 | 19.2 | -- | -- | -- | -- |
| 64.33 | 0.376 | 2.83 | -0.151 | 0.0586 | -- | -- | -- | 0.044 | 18.5 | -- | -- | -- | -- |
| 39.94 | 0.294 | 2.82 | -0.0613 | -- | 4.99 | -- | -- | 0.0668 | -- | 3.394 | 11 | 18 | 2 |
| 40.03 | 0.295 | 2.82 | -- | 0.0111 | 5.01 | -- | -- | 0.0738 | 20.3 | 3.901 | 18 | 18 | 0.487 |
| 64.51 | 0.375 | 2.83 | -0.152 | -- | -- | -- | -- | 0.0428 | -- | -- | -- | -- | -- |
| 64.93 | 0.377 | 2.82 | -- | 0.0606 | -- | -- | -- | 0.0608 | 18.4 | -- | -- | -- | -- |
| 40.04 | 0.295 | 2.82 | -- | -- | 5.01 | -- | -- | 0.0737 | -- | 3.909 | 18 | 18 | 0.257 |
| 65.12 | 0.377 | 2.82 | -- | -- | -- | -- | -- | 0.0597 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.65 | radiation | 1 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 23 | 39.83 | wind | 9 | 10 | > th | dose independent | rect. | 18 | 1 |
| 26 | 39.83 | wind | 9 | 10 | > th | dose dependent | rect. | 18 | 1 |
| 29 | 40.34 | wind | 9 | 90 | > th | dose dependent | rect. | 18 | 4 |
| 141 | 44.13 | radiation | 1 | 30 | > th | dose independent | rect. | 18 | 1 |
| 183 | 45.31 | wind | 9 | 90 | > th | dose independent | rect. | 18 | 8 |
| 234 | 51.22 | atmosphere | 1005 | 90 | < th | dose dependent | rect. | 16 | 1 |
| 235 | 51.34 | wind | 9 | 10 | > th | dose dependent | sin | 11 | NA |
| 248 | 52.27 | radiation | 40 | 270 | > th | dose independent | rect. | 15 | 1 |
| 265 | 52.27 | radiation | 40 | 270 | > th | dose dependent | rect. | 15 | 1 |
| 283 | 52.61 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 15 |
| 286 | 52.79 | atmosphere | 1005 | 10 | < th | dose independent | rect. | 18 | 1 |
| 289 | 52.82 | humidity | 80 | 10 | < th | dose dependent | rect. | 17 | 1 |
| 318 | 53.40 | wind | 1 | 270 | < th | dose dependent | rect. | 15 | 1 |
| 323 | 53.60 | radiation | 20 | 270 | > th | dose dependent | rect. | 16 | 1 |
| 337 | 53.61 | humidity | 60 | 270 | < th | dose independent | rect. | 16 | 1 |
| 371 | 53.98 | humidity | 60 | 270 | < th | dose independent | rect. | 15 | 18 |
| 373 | 54.12 | humidity | 60 | 270 | < th | dose independent | rect. | 14 | 20 |
| 396 | 54.22 | humidity | 60 | 270 | > th | dose independent | sin | 12 | NA |
| 398 | 54.30 | humidity | 60 | 270 | < th | dose independent | sin | 12 | NA |
| 478 | 54.73 | humidity | 60 | 270 | < th | dose dependent | rect. | 16 | 1 |
| 479 | 54.78 | wind | 1 | 270 | < th | dose independent | rect. | 15 | 1 |
| 497 | 55.08 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 14 | 3 |
| 519 | 55.27 | wind | 9 | 10 | > th | dose independent | sin | 12 | NA |
| 536 | 55.36 | wind | 9 | 10 | < th | dose independent | sin | 12 | NA |
| 539 | 55.41 | humidity | 80 | 30 | < th | dose independent | rect. | 17 | 1 |
| 579 | 55.91 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 14 | 1 |
| 665 | 56.54 | humidity | 70 | 270 | < th | dose dependent | rect. | 15 | 18 |
| 841 | 57.71 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 14 | 1 |
| 872 | 57.91 | humidity | 70 | 270 | < th | dose dependent | sin | 12 | NA |
| 895 | 58.17 | humidity | 60 | 270 | > th | dose independent | rect. | 11 | 13 |
| 909 | 58.20 | temperature | 20 | 30 | > th | dose independent | rect. | 17 | 1 |
| 922 | 58.26 | temperature | 25 | 90 | < th | dose independent | rect. | 17 | 1 |
| 940 | 58.40 | humidity | 60 | 270 | > th | dose independent | rect. | 18 | 23 |