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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0553300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4 (0.05) R2 : 0.36
β1 : -2.5 (0.183) R2dD : 0.273 R2D : 0.183
β2 : 0.768 (0.128) R2dC : 0.0509 R2C : 0.0164
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.902 (0.106) R2dN8 : 0.135 R2N8 : 0.0374
σ : 0.938
deviance : 401.33
__
_____
C
peak time of C : 7.67
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
372.35 0.907 3.97 -2.12 0.839 1.69 -3.75 -3.37 -0.77 15.5 0.01549 698 -- --
383.62 0.912 3.93 -2.2 1 1.89 -2.17 -- -0.76 15.3 0.1798 698 -- --
390.07 0.92 4.08 -2.35 1.08 2.01 -- 0.989 -0.908 15.9 0.04734 681 -- --
386.13 0.915 4.02 -2.31 1.35 2.02 -- -- -0.842 15.3 3.246e-05 614 -- --
409.54 0.943 4.02 -2.22 -- 1.45 -- 1.44 -0.822 -- 0.000646 920 -- --
398.38 0.936 4 -2.46 0.733 -- -1.18 -- -0.898 8.48 -- -- -- --
401.33 0.938 4 -2.5 0.768 -- -- -- -0.902 7.67 -- -- -- --
399.3 0.931 4.01 -2.28 -- 1.33 -- -- -0.816 -- 0.003987 1162 -- --
519.83 1.06 3.91 -- 1.72 2.46 -- -- -0.539 15.7 0.05864 614 -- --
433.05 0.972 4.02 -2.49 -- -- -- -- -0.89 -- -- -- -- --
566.36 1.11 3.93 -- 0.749 -- -- -- -0.623 7.9 -- -- -- --
513.83 1.06 3.92 -- -- 2.34 -- -- -0.478 -- 0.007811 1278 -- --
596.87 1.14 3.95 -- -- -- -- -- -0.614 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 362.83 temperature 15.0 90 > th dose independent rect. 9 17
2 363.08 radiation 40.0 90 < th dose independent rect. 9 18
7 364.02 precipitation 0.1 90 < th dose independent rect. 2 7
8 364.02 precipitation 0.1 90 < th dose dependent rect. 2 7
9 364.13 radiation 40.0 90 < th dose dependent rect. 9 18
10 364.16 wind 9.0 90 < th dose dependent rect. 2 7
15 364.56 radiation 30.0 10 < th dose independent rect. 11 16
18 364.67 temperature 15.0 10 > th dose independent rect. 9 18
19 364.70 wind 9.0 90 < th dose independent rect. 2 7
20 364.70 temperature 10.0 90 > th dose independent rect. 2 7
22 364.70 humidity 50.0 90 > th dose independent rect. 2 7
23 364.70 atmosphere 995.0 90 > th dose independent rect. 2 7
24 364.70 atmosphere 1015.0 90 < th dose independent rect. 2 7
26 364.76 wind 9.0 90 < th dose independent rect. 9 17
34 364.98 temperature 15.0 270 > th dose independent rect. 7 18
54 365.52 radiation 40.0 90 < th dose independent rect. 2 7
56 365.54 radiation 1.0 270 < th dose dependent rect. 2 14
59 365.60 precipitation 0.1 10 < th dose independent rect. 3 6
60 365.60 precipitation 0.1 10 < th dose dependent rect. 3 6
62 365.63 temperature 30.0 90 < th dose independent rect. 2 7
66 365.86 atmosphere 1015.0 90 < th dose dependent rect. 3 6
73 366.07 temperature 15.0 270 > th dose independent rect. 5 21
77 366.11 precipitation 0.1 90 < th dose independent rect. 9 17
78 366.11 precipitation 0.1 90 < th dose dependent rect. 9 17
96 366.70 radiation 1.0 270 < th dose independent rect. 2 14
98 366.71 wind 7.0 10 < th dose independent rect. 10 17
102 366.80 temperature 10.0 90 > th dose dependent rect. 3 6
107 366.95 wind 9.0 10 < th dose independent rect. 3 6
108 366.95 temperature 10.0 10 > th dose independent rect. 3 6
110 366.95 temperature 30.0 10 < th dose independent rect. 3 6
111 366.95 humidity 50.0 10 > th dose independent rect. 3 6
113 366.95 atmosphere 995.0 10 > th dose independent rect. 3 6
114 366.95 atmosphere 1015.0 10 < th dose independent rect. 3 6
120 366.98 precipitation 0.1 270 < th dose independent rect. 2 3
121 366.98 precipitation 0.1 270 < th dose dependent rect. 2 3
124 367.02 wind 9.0 90 < th dose dependent rect. 9 17
126 367.03 precipitation 0.1 10 < th dose independent rect. 9 18
127 367.03 precipitation 0.1 10 < th dose dependent rect. 9 18
165 367.25 precipitation 0.1 270 < th dose independent rect. 24 8
167 367.25 precipitation 0.1 270 < th dose dependent rect. 24 8
168 367.28 wind 9.0 270 < th dose independent rect. 7 18
175 367.37 wind 9.0 270 < th dose dependent rect. 2 3
188 367.41 temperature 10.0 90 > th dose dependent rect. 9 17
203 367.49 atmosphere 1015.0 270 < th dose dependent rect. 3 2
208 367.51 radiation 1.0 270 < th dose dependent rect. 2 3
211 367.57 wind 7.0 270 < th dose independent rect. 24 8
212 367.57 temperature 15.0 270 > th dose independent rect. 17 9
218 367.60 temperature 15.0 270 > th dose independent rect. 19 6
223 367.62 temperature 10.0 270 > th dose independent rect. 24 8
224 367.62 temperature 30.0 270 < th dose independent rect. 24 8
225 367.62 humidity 50.0 270 > th dose independent rect. 24 8
227 367.62 atmosphere 995.0 270 > th dose independent rect. 24 8
228 367.62 atmosphere 1015.0 270 < th dose independent rect. 24 8
240 367.68 radiation 40.0 270 < th dose independent rect. 24 8
243 367.69 wind 9.0 270 < th dose independent rect. 2 3
244 367.69 temperature 10.0 270 > th dose independent rect. 2 3
246 367.69 temperature 30.0 270 < th dose independent rect. 2 3
247 367.69 humidity 50.0 270 > th dose independent rect. 2 3
250 367.69 atmosphere 995.0 270 > th dose independent rect. 2 3
251 367.69 atmosphere 1010.0 270 < th dose independent rect. 2 3
253 367.69 radiation 20.0 270 < th dose independent rect. 2 3
263 367.70 radiation 30.0 270 < th dose dependent rect. 2 3
269 367.72 wind 5.0 270 < th dose independent rect. 2 3
275 367.75 radiation 1.0 270 < th dose independent rect. 2 3
296 367.82 wind 9.0 270 < th dose independent rect. 5 21
313 367.89 precipitation 0.1 270 < th dose independent rect. 7 18
315 367.89 precipitation 0.1 270 < th dose dependent rect. 7 18
325 368.01 temperature 10.0 270 > th dose dependent rect. 19 6
326 368.01 radiation 40.0 270 < th dose dependent rect. 1 6
333 368.04 atmosphere 995.0 90 > th dose independent rect. 9 17
348 368.09 temperature 15.0 90 > th dose independent rect. 19 8
391 368.20 radiation 1.0 270 < th dose dependent sin 2 NA
404 368.25 temperature 10.0 1440 > th dose independent rect. 4 6
407 368.25 atmosphere 995.0 1440 > th dose independent rect. 4 6
408 368.25 atmosphere 1015.0 1440 < th dose independent rect. 4 6
409 368.25 temperature 10.0 1440 > th dose independent rect. 10 18
429 368.31 precipitation 0.1 270 < th dose independent rect. 2 15
430 368.31 precipitation 0.1 270 < th dose dependent rect. 2 15
513 368.52 radiation 30.0 270 < th dose dependent rect. 16 10
528 368.56 wind 9.0 90 < th dose dependent rect. 11 15
545 368.66 temperature 10.0 10 > th dose dependent rect. 9 18
547 368.67 wind 9.0 10 < th dose dependent rect. 16 11
551 368.70 humidity 50.0 90 > th dose dependent rect. 3 6
569 368.78 temperature 10.0 270 > th dose dependent rect. 2 4
592 368.88 atmosphere 995.0 270 > th dose independent rect. 2 15
602 368.92 wind 9.0 270 < th dose dependent rect. 16 9
613 368.98 humidity 50.0 90 > th dose independent rect. 9 17
641 369.02 radiation 40.0 90 < th dose dependent rect. 3 6
653 369.07 wind 9.0 10 < th dose dependent rect. 11 16
661 369.09 humidity 50.0 90 > th dose dependent rect. 17 10
663 369.10 atmosphere 995.0 270 > th dose independent rect. 7 18
664 369.10 radiation 1.0 270 < th dose dependent rect. 2 7
666 369.12 atmosphere 995.0 270 > th dose independent rect. 17 9
676 369.17 radiation 20.0 270 < th dose independent rect. 16 10
687 369.20 precipitation 0.1 270 < th dose independent rect. 5 21
691 369.20 precipitation 0.1 270 < th dose dependent rect. 5 21
693 369.21 temperature 15.0 10 > th dose independent rect. 20 7
723 369.25 temperature 10.0 270 > th dose independent rect. 2 15
724 369.25 atmosphere 1015.0 270 < th dose independent rect. 2 15
728 369.27 temperature 10.0 10 > th dose dependent rect. 3 6
753 369.36 atmosphere 1015.0 90 < th dose independent rect. 9 17
767 369.44 humidity 50.0 270 > th dose independent rect. 17 9
786 369.48 humidity 90.0 720 < th dose dependent rect. 18 1
824 369.59 wind 9.0 270 < th dose independent rect. 17 9
891 369.77 wind 9.0 270 < th dose independent rect. 2 15
907 369.83 precipitation 0.1 270 < th dose independent rect. 17 9
908 369.83 precipitation 0.1 270 < th dose dependent rect. 17 9
927 369.87 wind 9.0 90 < th dose dependent rect. 19 8
929 369.90 radiation 1.0 270 < th dose independent sin 3 NA
991 370.04 precipitation 0.1 270 < th dose independent rect. 1 18
994 370.04 precipitation 0.1 270 < th dose dependent rect. 1 18
996 370.05 temperature 30.0 90 < th dose independent rect. 19 8
997 370.05 humidity 50.0 90 > th dose independent rect. 19 8
999 370.05 atmosphere 995.0 90 > th dose independent rect. 19 8
1000 370.05 radiation 1.0 90 < th dose independent rect. 19 8