Os04g0551800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha).
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Os04g0551800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to T-complex protein 1, alpha subunit (TCP-1-alpha) (CCT-alpha).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 66.16 | 0.382 | 10.9 | 0.882 | 1.21 | -0.381 | 0.364 | 1.04 | 0.216 | 16.5 | 19.6 | 4099 | -- | -- |
| 68.56 | 0.386 | 10.9 | 1.01 | 1.23 | -0.543 | 0.468 | -- | 0.259 | 16.4 | 19.46 | 6756 | -- | -- |
| 66.02 | 0.378 | 10.9 | 0.929 | 1.22 | -0.432 | -- | 0.921 | 0.229 | 16.5 | 19.6 | 2602 | -- | -- |
| 67.3 | 0.382 | 10.8 | 1.09 | 1.19 | -0.564 | -- | -- | 0.285 | 16.3 | 18.7 | 2562 | -- | -- |
| 144.65 | 0.56 | 10.9 | 0.897 | -- | -0.334 | -- | 1.02 | 0.209 | -- | 19.52 | 3389 | -- | -- |
| 73.45 | 0.402 | 10.8 | 1.37 | 1.2 | -- | 0.469 | -- | 0.397 | 16.6 | -- | -- | -- | -- |
| 74.04 | 0.403 | 10.8 | 1.37 | 1.2 | -- | -- | -- | 0.399 | 16.5 | -- | -- | -- | -- |
| 145.57 | 0.562 | 10.8 | 0.891 | -- | -0.596 | -- | -- | 0.248 | -- | 16.7 | 14927 | -- | -- |
| 72.38 | 0.396 | 10.9 | -- | 1.2 | -1.13 | -- | -- | 0.0125 | 16.4 | 18.1 | 47344 | -- | -- |
| 150.85 | 0.574 | 10.8 | 1.33 | -- | -- | -- | -- | 0.368 | -- | -- | -- | -- | -- |
| 123.81 | 0.52 | 10.9 | -- | 1.17 | -- | -- | -- | 0.246 | 16.6 | -- | -- | -- | -- |
| 150.04 | 0.571 | 10.9 | -- | -- | -1.16 | -- | -- | -0.00713 | -- | 16.88 | 47520 | -- | -- |
| 197.36 | 0.656 | 10.8 | -- | -- | -- | -- | -- | 0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.22 | temperature | 20 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 2 | 62.75 | temperature | 20 | 90 | > th | dose dependent | rect. | 8 | 7 |
| 3 | 62.88 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 6 |
| 6 | 63.02 | temperature | 20 | 270 | > th | dose dependent | rect. | 8 | 3 |
| 13 | 63.31 | temperature | 15 | 90 | > th | dose dependent | rect. | 8 | 9 |
| 36 | 63.80 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 3 | 5 |
| 59 | 64.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 60 | 64.02 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 62 | 64.03 | temperature | 25 | 90 | > th | dose dependent | sin | 3 | NA |
| 76 | 64.13 | atmosphere | 1005 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 107 | 64.44 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 122 | 64.59 | temperature | 25 | 270 | > th | dose independent | rect. | 9 | 1 |
| 131 | 64.61 | temperature | 10 | 90 | > th | dose dependent | rect. | 8 | 19 |
| 142 | 64.67 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 14 |
| 155 | 64.73 | temperature | 25 | 270 | > th | dose independent | rect. | 8 | 3 |
| 156 | 64.73 | humidity | 90 | 10 | < th | dose independent | rect. | 3 | 6 |
| 161 | 64.75 | temperature | 10 | 10 | > th | dose dependent | rect. | 9 | 18 |
| 178 | 64.84 | temperature | 25 | 90 | > th | dose dependent | rect. | 20 | 19 |
| 194 | 64.90 | atmosphere | 1005 | 10 | < th | dose dependent | rect. | 24 | 8 |
| 196 | 64.91 | temperature | 20 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 198 | 64.92 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 199 | 64.92 | wind | 1 | 43200 | > th | dose independent | rect. | 17 | 20 |
| 214 | 64.97 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 6 |
| 219 | 64.98 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 21 |
| 240 | 65.07 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 245 | 65.08 | atmosphere | 1005 | 270 | < th | dose dependent | rect. | 23 | 8 |
| 252 | 65.10 | temperature | 20 | 4320 | > th | dose independent | rect. | 17 | 8 |
| 258 | 65.11 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 261 | 65.11 | wind | 5 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 266 | 65.11 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 14 |
| 275 | 65.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 17 | 8 |
| 276 | 65.13 | temperature | 20 | 4320 | < th | dose independent | rect. | 16 | 10 |
| 291 | 65.17 | wind | 3 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 292 | 65.17 | wind | 3 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 330 | 65.24 | atmosphere | 1005 | 90 | > th | dose dependent | rect. | 24 | 8 |
| 335 | 65.25 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 348 | 65.27 | wind | 1 | 43200 | > th | dose independent | rect. | 19 | 18 |
| 364 | 65.30 | wind | 1 | 43200 | > th | dose independent | sin | 15 | NA |
| 450 | 65.44 | wind | 1 | 43200 | < th | dose independent | sin | 15 | NA |
| 452 | 65.44 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 458 | 65.45 | temperature | 20 | 4320 | > th | dose independent | sin | 16 | NA |
| 463 | 65.45 | temperature | 25 | 90 | > th | dose dependent | rect. | 19 | 22 |
| 465 | 65.46 | temperature | 20 | 4320 | < th | dose independent | sin | 15 | NA |
| 488 | 65.51 | atmosphere | 1005 | 10 | > th | dose dependent | rect. | 24 | 9 |
| 537 | 65.60 | wind | 1 | 14400 | > th | dose independent | rect. | 23 | 3 |
| 539 | 65.60 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 22 |
| 540 | 65.60 | wind | 1 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 553 | 65.62 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 23 |
| 560 | 65.63 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 1 |
| 573 | 65.65 | wind | 1 | 14400 | < th | dose independent | rect. | 23 | 3 |
| 579 | 65.66 | temperature | 20 | 4320 | > th | dose independent | rect. | 22 | 1 |
| 607 | 65.69 | temperature | 20 | 4320 | < th | dose independent | rect. | 22 | 1 |
| 614 | 65.69 | wind | 1 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 662 | 65.75 | wind | 1 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 677 | 65.78 | wind | 9 | 14400 | < th | dose independent | rect. | 23 | 5 |
| 709 | 65.81 | wind | 1 | 43200 | > th | dose independent | rect. | 10 | 21 |
| 714 | 65.82 | humidity | 50 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 742 | 65.85 | temperature | 30 | 90 | < th | dose dependent | sin | 1 | NA |
| 761 | 65.87 | wind | 1 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 763 | 65.87 | wind | 1 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 764 | 65.87 | wind | 3 | 43200 | < th | dose dependent | rect. | 8 | 1 |
| 819 | 65.95 | temperature | 10 | 43200 | > th | dose independent | rect. | 10 | 2 |
| 830 | 65.96 | radiation | 40 | 270 | > th | dose independent | rect. | 9 | 1 |
| 855 | 65.99 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 23 |
| 878 | 66.01 | wind | 1 | 43200 | > th | dose independent | rect. | 8 | 23 |
| 906 | 66.04 | humidity | 70 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 934 | 66.07 | wind | 1 | 43200 | > th | dose independent | no | NA | NA |
| 935 | 66.07 | wind | 1 | 4320 | > th | dose independent | rect. | 23 | 1 |
| 946 | 66.08 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 4 |
| 950 | 66.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 6 | 14 |
| 965 | 66.10 | humidity | 70 | 43200 | < th | dose independent | rect. | 23 | 8 |
| 975 | 66.11 | radiation | 20 | 4320 | < th | dose independent | rect. | 17 | 14 |