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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0550900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description :


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.61 (0.0584) R2 : 0.359
β1 : -2.65 (0.214) R2dD : 0.224 R2D : 0.246
β2 : -- (--) R2dC : -- R2C : --
β3 : 2.61 (0.385) R2dE : 0.065 R2E : 0.0437
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.668 (0.125) R2dN8 : 0.0541 R2N8 : 0.0728
σ : 1.09
deviance : 550.32
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_____
C
peak time of C : --
E
wheather : wind
threshold : 1.338
memory length : 1107
response mode : < th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 21.9
open length of G : 0.548

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
544.1 1.1 3.61 -2.78 0.46 2.37 -0.221 -1.58 0.688 13.6 1.389 795 21.9 0.783
545.17 1.09 3.61 -2.72 0.455 2.6 -0.18 -- 0.68 13.6 1.377 790 21.9 0.683
544.25 1.09 3.61 -2.79 0.463 2.37 -- -1.48 0.694 13.6 1.403 796 21.9 0.786
545.17 1.09 3.61 -2.73 0.443 2.66 -- -- 0.672 13.6 1.403 788 21.9 0.63
551.57 1.09 3.62 -2.67 -- 2.41 -- -0.817 0.678 -- 1.436 933 21.9 0.533
597.58 1.15 3.62 -2.61 0.331 -- -0.551 -- 0.628 11.9 -- -- -- --
598.89 1.15 3.62 -2.64 0.333 -- -- -- 0.625 11.8 -- -- -- --
550.32 1.09 3.61 -2.65 -- 2.61 -- -- 0.668 -- 1.338 1107 21.9 0.548
706.94 1.24 3.62 -- 0.3 3.11 -- -- 0.839 13.9 1.005 1014 22.1 0.243
605.88 1.15 3.62 -2.65 -- -- -- -- 0.621 -- -- -- -- --
782.17 1.31 3.55 -- 0.368 -- -- -- 0.919 12.2 -- -- -- --
713.56 1.24 3.61 -- -- 3.11 -- -- 0.865 -- 1 1253 22.1 0.25
790.69 1.31 3.56 -- -- -- -- -- 0.915 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 552.21 wind 9.0 1440 < th dose independent rect. 5 5
3 553.08 wind 1.0 720 < th dose dependent rect. 22 1
4 553.83 wind 9.0 4320 < th dose independent rect. 9 1
7 557.17 wind 9.0 4320 > th dose dependent rect. 7 3
8 557.22 wind 1.0 720 < th dose independent rect. 22 1
11 558.19 wind 9.0 4320 > th dose dependent rect. 9 1
13 558.64 wind 9.0 1440 < th dose independent rect. 1 9
18 559.59 wind 7.0 4320 > th dose dependent rect. 5 4
21 560.05 wind 9.0 4320 > th dose independent rect. 9 1
41 562.44 wind 1.0 720 < th dose dependent rect. 16 8
57 563.78 wind 7.0 4320 > th dose dependent rect. 23 11
70 564.78 wind 7.0 4320 > th dose independent rect. 23 11
75 564.87 atmosphere 1000.0 30 > th dose dependent rect. 3 6
107 566.11 wind 7.0 4320 > th dose independent rect. 1 1
112 566.11 wind 7.0 4320 > th dose dependent rect. 1 1
137 566.64 wind 1.0 30 < th dose dependent rect. 22 4
163 566.94 wind 9.0 4320 > th dose independent rect. 19 1
164 566.94 wind 9.0 4320 > th dose dependent rect. 19 1
184 567.55 wind 1.0 1440 > th dose independent rect. 22 1
200 567.88 wind 5.0 4320 > th dose dependent sin 7 NA
245 568.80 wind 5.0 4320 > th dose independent rect. 4 1
246 568.80 wind 5.0 4320 > th dose independent rect. 2 3
248 568.81 wind 5.0 4320 > th dose dependent rect. 21 17
262 569.00 wind 7.0 4320 > th dose independent sin 7 NA
265 569.02 wind 5.0 4320 > th dose dependent rect. 4 1
267 569.05 radiation 30.0 10 < th dose dependent rect. 10 1
273 569.12 wind 7.0 4320 < th dose independent sin 7 NA
276 569.16 radiation 40.0 90 < th dose independent rect. 11 22
287 569.27 wind 5.0 4320 > th dose independent rect. 23 14
326 569.52 wind 5.0 4320 > th dose dependent rect. 24 5
333 569.57 atmosphere 1015.0 90 < th dose independent rect. 11 22
348 569.67 temperature 10.0 30 > th dose dependent rect. 3 6
391 569.92 wind 5.0 4320 < th dose independent rect. 22 16
414 570.02 atmosphere 1005.0 30 > th dose independent rect. 3 6
438 570.16 wind 9.0 30 < th dose independent rect. 9 18
464 570.32 precipitation 0.1 30 < th dose independent rect. 3 6
466 570.32 precipitation 0.1 30 < th dose dependent rect. 3 6
483 570.40 humidity 50.0 30 > th dose independent rect. 9 18
502 570.47 radiation 40.0 30 < th dose independent rect. 3 6
509 570.51 wind 9.0 30 < th dose independent rect. 3 6
510 570.51 temperature 10.0 30 > th dose independent rect. 3 6
512 570.51 temperature 30.0 30 < th dose independent rect. 3 6
513 570.51 humidity 50.0 30 > th dose independent rect. 3 6
515 570.51 atmosphere 995.0 30 > th dose independent rect. 3 6
516 570.51 atmosphere 1015.0 30 < th dose independent rect. 3 6
517 570.51 temperature 10.0 30 > th dose independent rect. 9 18
532 570.57 precipitation 0.1 30 < th dose independent rect. 9 18
537 570.57 precipitation 0.1 30 < th dose dependent rect. 9 18
539 570.59 wind 7.0 4320 > th dose independent rect. 19 18
553 570.70 wind 7.0 4320 < th dose independent rect. 19 18
564 570.77 temperature 10.0 1440 > th dose independent rect. 4 6
567 570.77 atmosphere 995.0 1440 > th dose independent rect. 4 6
568 570.77 atmosphere 1015.0 1440 < th dose independent rect. 4 6
571 570.77 temperature 10.0 1440 > th dose independent rect. 10 18
577 570.78 humidity 50.0 1440 > th dose independent rect. 4 6
620 570.97 atmosphere 1005.0 90 > th dose independent rect. 9 2
652 571.12 atmosphere 1005.0 90 > th dose dependent rect. 3 2
658 571.18 wind 9.0 4320 < th dose independent rect. 21 1
684 571.36 temperature 25.0 10 > th dose independent rect. 20 13
712 571.56 atmosphere 1015.0 10 < th dose independent rect. 11 23
713 571.56 atmosphere 995.0 90 > th dose dependent rect. 9 2
738 571.67 atmosphere 995.0 30 > th dose dependent rect. 9 18
744 571.68 wind 1.0 30 < th dose dependent rect. 9 18
748 571.70 wind 9.0 4320 > th dose dependent rect. 21 20
769 571.86 atmosphere 995.0 30 > th dose independent rect. 9 18
791 571.97 wind 9.0 30 < th dose dependent rect. 3 6
837 572.21 wind 1.0 720 < th dose independent rect. 16 8
845 572.24 wind 9.0 4320 < th dose independent rect. 21 3
867 572.35 temperature 25.0 10 > th dose independent rect. 18 15
868 572.36 wind 7.0 4320 < th dose independent rect. 23 1
872 572.37 wind 1.0 10 > th dose dependent rect. 10 1
875 572.38 wind 9.0 43200 < th dose independent rect. 21 1
886 572.41 atmosphere 1015.0 10 < th dose dependent rect. 10 1
895 572.44 radiation 1.0 4320 > th dose independent rect. 18 11
904 572.46 radiation 1.0 720 > th dose independent rect. 18 1
925 572.49 wind 9.0 4320 > th dose dependent rect. 1 16
967 572.57 wind 9.0 4320 > th dose dependent rect. 19 22
971 572.59 radiation 1.0 4320 > th dose independent rect. 18 1
983 572.60 temperature 20.0 30 > th dose dependent rect. 9 2
984 572.60 wind 9.0 4320 > th dose dependent rect. 3 14
987 572.61 atmosphere 1005.0 90 > th dose independent rect. 3 2
1000 572.68 radiation 10.0 4320 > th dose independent rect. 17 13