Os04g0550500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to N-acetyl glutamate kinase 2.
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Os04g0550500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to N-acetyl glutamate kinase 2.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.89 | 0.253 | 10 | 0.292 | 0.758 | 0.536 | 1.12 | 0.488 | -0.111 | 17 | 19.9 | 1077 | -- | -- |
| 29.25 | 0.252 | 10 | 0.226 | 0.759 | 0.426 | 1.05 | -- | -0.129 | 17 | 20.52 | 1065 | -- | -- |
| 31.94 | 0.263 | 10 | 0.266 | 0.771 | 0.503 | -- | 0.306 | -0.114 | 17.1 | 20.2 | 1075 | -- | -- |
| 32.03 | 0.264 | 10 | 0.225 | 0.766 | 0.441 | -- | -- | -0.129 | 17.1 | 20.51 | 1065 | -- | -- |
| 60.45 | 0.362 | 9.99 | 0.331 | -- | 0.443 | -- | 0.472 | -0.121 | -- | 20.7 | 565 | -- | -- |
| 34.01 | 0.273 | 9.99 | 0.404 | 0.745 | -- | 1.13 | -- | -0.0336 | 17.2 | -- | -- | -- | -- |
| 37.18 | 0.286 | 9.99 | 0.402 | 0.754 | -- | -- | -- | -0.0286 | 17.4 | -- | -- | -- | -- |
| 37.86 | 0.287 | 10 | 0.268 | -- | 0.635 | -- | -- | -0.226 | -- | 26.4 | 314 | -- | -- |
| 33.15 | 0.268 | 10 | -- | 0.77 | 0.527 | -- | -- | -0.162 | 17.1 | 20.47 | 1074 | -- | -- |
| 66.83 | 0.382 | 9.98 | 0.377 | -- | -- | -- | -- | -0.0472 | -- | -- | -- | -- | -- |
| 41.45 | 0.301 | 10 | -- | 0.747 | -- | -- | -- | -0.0734 | 17.4 | -- | -- | -- | -- |
| 38.86 | 0.29 | 10 | -- | -- | 0.668 | -- | -- | -0.251 | -- | 26.36 | 315 | -- | -- |
| 70.57 | 0.392 | 9.99 | -- | -- | -- | -- | -- | -0.089 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.88 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 2 | 26.02 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 14 | 26.74 | temperature | 30 | 720 | < th | dose dependent | rect. | 24 | 15 |
| 15 | 26.75 | temperature | 25 | 720 | < th | dose independent | rect. | 7 | 4 |
| 31 | 26.96 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 6 |
| 50 | 27.16 | temperature | 25 | 720 | > th | dose independent | rect. | 5 | 10 |
| 55 | 27.19 | temperature | 30 | 720 | < th | dose dependent | sin | 3 | NA |
| 88 | 27.43 | temperature | 30 | 720 | < th | dose dependent | rect. | 7 | 5 |
| 117 | 27.56 | temperature | 25 | 720 | < th | dose independent | rect. | 2 | 11 |
| 133 | 27.65 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 2 |
| 138 | 27.67 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 152 | 27.70 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 195 | 27.83 | temperature | 30 | 270 | < th | dose dependent | rect. | 8 | 11 |
| 280 | 28.03 | temperature | 25 | 720 | < th | dose independent | sin | 3 | NA |
| 300 | 28.09 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 2 |
| 328 | 28.16 | temperature | 15 | 270 | > th | dose dependent | rect. | 5 | 17 |
| 357 | 28.22 | temperature | 25 | 270 | < th | dose independent | rect. | 7 | 12 |
| 382 | 28.28 | temperature | 25 | 720 | > th | dose independent | sin | 3 | NA |
| 446 | 28.40 | temperature | 10 | 270 | > th | dose dependent | rect. | 3 | 21 |
| 551 | 28.64 | temperature | 15 | 720 | > th | dose dependent | rect. | 12 | 3 |
| 554 | 28.64 | temperature | 15 | 10 | > th | dose dependent | rect. | 5 | 19 |
| 569 | 28.67 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 17 |
| 598 | 28.72 | temperature | 20 | 720 | > th | dose dependent | rect. | 12 | 1 |
| 615 | 28.76 | temperature | 20 | 720 | < th | dose independent | rect. | 4 | 3 |
| 646 | 28.81 | temperature | 20 | 1440 | > th | dose independent | rect. | 19 | 8 |
| 672 | 28.85 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 8 |
| 824 | 29.04 | temperature | 30 | 720 | < th | dose dependent | rect. | 2 | 1 |
| 857 | 29.09 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 2 |
| 946 | 29.20 | temperature | 20 | 1440 | > th | dose independent | sin | 14 | NA |
| 992 | 29.23 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |