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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0549500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Transcription factor MYB86 (Myb-related protein 86) (AtMYB86) (Myb homolog 4) (AtMyb4).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.81 (0.0271) R2 : 0.285
β1 : 0.826 (0.102) R2dD : 0.117 R2D : 0.0492
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.27 (0.121) R2dE : 0.219 R2E : 0.16
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0578 (0.0625) R2dN8 : 0.00208 R2N8 : 0.0212
σ : 0.495
deviance : 112.93
__
_____
C
peak time of C : --
E
wheather : temperature
threshold : 26.78
memory length : 559
response mode : < th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
106.77 0.485 3.81 0.806 0.37 1.28 0.689 -0.218 -0.11 10.1 24.1 252 -- --
106.85 0.481 3.81 0.776 0.359 1.32 0.706 -- -0.115 10.2 24.02 269 -- --
108.63 0.485 3.8 0.833 0.374 1.29 -- -0.315 -0.0984 10.3 24.1 251 -- --
108.78 0.486 3.81 0.817 0.372 1.33 -- -- -0.11 10.3 24 251 -- --
112.81 0.495 3.8 0.881 -- 1.18 -- -0.548 -0.0366 -- 27.15 540 -- --
130.66 0.536 3.86 0.452 0.355 -- 0.756 -- -0.338 9 -- -- -- --
132.62 0.539 3.86 0.477 0.355 -- -- -- -0.338 8.83 -- -- -- --
112.93 0.495 3.81 0.826 -- 1.27 -- -- -0.0578 -- 26.78 559 -- --
124.06 0.519 3.84 -- 0.356 0.981 -- -- -0.25 9.83 24.01 251 -- --
139.78 0.552 3.87 0.477 -- -- -- -- -0.335 -- -- -- -- --
138.61 0.551 3.87 -- 0.356 -- -- -- -0.391 8.73 -- -- -- --
128.75 0.528 3.84 -- -- 0.951 -- -- -0.208 -- 27.02 527 -- --
145.79 0.564 3.88 -- -- -- -- -- -0.388 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 102.35 wind 9 43200 > th dose dependent rect. 18 12
4 102.56 wind 9 43200 > th dose dependent rect. 18 6
5 102.57 wind 9 43200 > th dose dependent rect. 18 9
8 102.72 wind 9 43200 > th dose independent rect. 18 6
10 102.80 wind 9 43200 > th dose independent rect. 18 9
13 102.97 wind 9 43200 < th dose independent rect. 18 6
14 103.03 wind 9 43200 > th dose independent rect. 18 13
22 103.52 wind 9 43200 < th dose independent rect. 18 13
29 104.48 wind 9 43200 > th dose dependent rect. 18 4
43 105.11 wind 9 43200 < th dose independent rect. 18 4
47 105.16 wind 7 43200 > th dose dependent rect. 14 20
59 105.39 wind 9 43200 > th dose dependent sin 13 NA
64 105.52 wind 9 43200 > th dose independent sin 12 NA
65 105.57 wind 5 43200 > th dose independent rect. 14 18
69 105.64 wind 5 43200 > th dose independent sin 15 NA
70 105.64 wind 5 43200 > th dose independent rect. 15 12
82 105.70 wind 5 43200 < th dose independent sin 14 NA
92 105.75 wind 7 43200 < th dose independent rect. 14 20
93 105.76 wind 5 43200 < th dose independent rect. 14 18
101 105.81 wind 5 43200 < th dose independent rect. 16 11
111 105.85 atmosphere 995 43200 < th dose dependent rect. 15 1
112 105.85 wind 3 43200 > th dose dependent rect. 19 2
127 105.91 wind 7 43200 > th dose dependent rect. 16 17
150 106.03 wind 9 43200 < th dose independent sin 12 NA
151 106.03 atmosphere 995 43200 < th dose independent rect. 14 2
172 106.11 atmosphere 995 43200 > th dose independent rect. 14 2
190 106.17 atmosphere 995 43200 < th dose independent rect. 13 4
196 106.19 atmosphere 995 43200 > th dose independent rect. 11 11
203 106.24 atmosphere 995 43200 < th dose independent rect. 12 10
219 106.28 wind 5 43200 > th dose dependent rect. 15 12
220 106.29 atmosphere 995 43200 > th dose independent sin 22 NA
250 106.35 atmosphere 995 43200 > th dose independent rect. 6 13
271 106.38 wind 5 43200 > th dose dependent sin 14 NA
295 106.42 atmosphere 995 43200 < th dose independent sin 21 NA
296 106.42 wind 7 43200 > th dose independent rect. 20 1
346 106.49 atmosphere 995 43200 < th dose independent rect. 5 14
358 106.51 wind 3 43200 > th dose dependent rect. 17 8
413 106.59 temperature 25 270 < th dose dependent rect. 21 22
454 106.68 wind 5 43200 < th dose independent rect. 9 18
463 106.70 wind 5 43200 < th dose independent rect. 6 19
472 106.71 atmosphere 995 43200 < th dose dependent rect. 14 8
500 106.76 temperature 30 720 < th dose dependent rect. 17 16
523 106.80 wind 5 43200 > th dose independent rect. 6 19
533 106.81 wind 3 43200 > th dose dependent rect. 8 19
541 106.82 atmosphere 995 43200 < th dose dependent rect. 14 5
578 106.88 wind 5 43200 < th dose independent rect. 22 23
579 106.88 wind 9 43200 < th dose dependent rect. 20 1
676 107.00 wind 5 43200 > th dose independent rect. 22 23
678 107.00 temperature 10 720 > th dose dependent rect. 18 16
730 107.10 wind 5 43200 < th dose independent no NA NA
758 107.12 temperature 25 270 < th dose dependent rect. 14 22
816 107.19 temperature 30 720 < th dose dependent sin 11 NA
839 107.22 wind 5 43200 > th dose independent no NA NA
850 107.22 wind 7 43200 > th dose dependent rect. 17 22
854 107.23 wind 5 43200 < th dose independent rect. 2 19
860 107.23 wind 7 43200 > th dose dependent rect. 22 23
862 107.24 wind 5 43200 > th dose independent rect. 6 15
924 107.29 wind 5 43200 > th dose independent rect. 2 19
944 107.30 temperature 25 270 < th dose dependent rect. 3 23
978 107.34 wind 7 43200 > th dose dependent rect. 2 23
981 107.34 temperature 25 270 < th dose dependent rect. 7 23
990 107.35 temperature 10 720 > th dose dependent rect. 17 21