Os04g0549400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0549400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 28.9 | 0.253 | 8.85 | -1 | 0.637 | 0.988 | -0.198 | 0.584 | -0.204 | 9.79 | 9.06 | 15 | -- | -- |
| 29.14 | 0.251 | 8.86 | -1.09 | 0.639 | 1.01 | -0.116 | -- | -0.23 | 9.77 | 10.87 | 18 | -- | -- |
| 29.03 | 0.251 | 8.86 | -1.03 | 0.637 | 0.984 | -- | 0.425 | -0.21 | 9.83 | 11.11 | 14 | -- | -- |
| 29.17 | 0.252 | 8.86 | -1.09 | 0.64 | 0.993 | -- | -- | -0.226 | 9.84 | 11.44 | 18 | -- | -- |
| 51.23 | 0.333 | 8.89 | -1.11 | -- | 1.33 | -- | 0.342 | -0.257 | -- | 14.3 | 4 | -- | -- |
| 38.49 | 0.291 | 8.83 | -0.896 | 0.787 | -- | 0.053 | -- | -0.0851 | 11.2 | -- | -- | -- | -- |
| 38.5 | 0.291 | 8.83 | -0.894 | 0.786 | -- | -- | -- | -0.0849 | 11.1 | -- | -- | -- | -- |
| 51.27 | 0.333 | 8.89 | -1.16 | -- | 1.34 | -- | -- | -0.271 | -- | 14.25 | 3 | -- | -- |
| 56.96 | 0.353 | 8.82 | -- | 0.713 | 0.397 | -- | -- | -0.0256 | 10.5 | 24.1 | 26 | -- | -- |
| 77.11 | 0.41 | 8.85 | -0.912 | -- | -- | -- | -- | -0.0916 | -- | -- | -- | -- | -- |
| 59.55 | 0.361 | 8.81 | -- | 0.795 | -- | -- | -- | 0.0146 | 11.2 | -- | -- | -- | -- |
| 83.5 | 0.427 | 8.85 | -- | -- | 0.819 | -- | -- | -0.103 | -- | 19.7 | 5 | -- | -- |
| 99.07 | 0.465 | 8.83 | -- | -- | -- | -- | -- | 0.00962 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 28.39 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 3 | 28.60 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 5 | 28.64 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 22 |
| 6 | 28.71 | temperature | 15 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 9 | 28.77 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 13 | 28.94 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 14 | 28.94 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 15 | 28.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 19 | 28.97 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 20 | 28.98 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 21 | 28.98 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 23 | 28.99 | temperature | 20 | 30 | > th | dose dependent | rect. | 5 | 21 |
| 25 | 29.00 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 29 | 29.02 | temperature | 15 | 30 | > th | dose dependent | rect. | 23 | 23 |
| 35 | 29.11 | temperature | 30 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 36 | 29.11 | temperature | 30 | 10 | < th | dose dependent | rect. | 22 | 23 |
| 108 | 29.83 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 127 | 29.91 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 129 | 29.92 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 154 | 30.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 19 |
| 167 | 30.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 20 |
| 174 | 30.11 | temperature | 10 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 188 | 30.15 | temperature | 20 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 202 | 30.22 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 210 | 30.26 | temperature | 20 | 10 | > th | dose dependent | rect. | 8 | 23 |
| 314 | 30.70 | temperature | 15 | 30 | > th | dose dependent | sin | 22 | NA |
| 356 | 30.81 | temperature | 20 | 10 | > th | dose dependent | rect. | 15 | 23 |
| 366 | 30.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 395 | 30.92 | temperature | 30 | 30 | < th | dose dependent | sin | 21 | NA |
| 425 | 30.98 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 428 | 30.99 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 11 |
| 451 | 31.05 | wind | 9 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 461 | 31.07 | wind | 9 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 514 | 31.18 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 3 |
| 538 | 31.22 | wind | 9 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 583 | 31.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 13 |
| 586 | 31.30 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 17 |
| 600 | 31.33 | wind | 5 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 668 | 31.42 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 11 |
| 679 | 31.43 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 10 |
| 702 | 31.46 | wind | 9 | 43200 | > th | dose dependent | rect. | 18 | 6 |
| 722 | 31.49 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 856 | 31.68 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 913 | 31.74 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 19 |
| 934 | 31.77 | temperature | 10 | 720 | > th | dose dependent | sin | 4 | NA |
| 983 | 31.82 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 3 |