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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0548500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.8 (0.0499) R2 : 0.375
β1 : 0.714 (0.183) R2dD : 0.0217 R2D : 0.00264
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.98 (0.127) R2dE : 0.336 R2E : 0.339
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.369 (0.107) R2dN8 : 0.0222 R2N8 : 0.0243
σ : 0.932
deviance : 400.65
__
_____
C
peak time of C : --
E
wheather : radiation
threshold : 2.39
memory length : 75
response mode : > th
dose dependency : dose independent
G
type of G : sin
peak or start time of G : 23.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
394.37 0.933 3.78 0.674 0.367 1.68 1.21 -0.414 0.392 8.14 2.39 75 23.5 --
394.62 0.925 3.79 0.675 0.363 1.71 0.898 -- 0.383 8.03 2.61 73 23.6 --
396.15 0.927 3.78 0.665 0.362 1.69 -- 0.61 0.385 8.72 2.39 75 23.6 --
396.42 0.927 3.79 0.719 0.518 1.63 -- -- 0.381 9.66 2.63 73 0.349 --
399.91 0.931 3.8 0.711 -- 2 -- 0.495 0.368 -- 2.39 75 23.8 --
435.02 0.978 3.72 0.652 1.73 -- 0.492 -- 0.517 9.87 -- -- -- --
435.95 0.978 3.72 0.671 1.73 -- -- -- 0.518 9.88 -- -- -- --
400.65 0.932 3.8 0.714 -- 1.98 -- -- 0.369 -- 2.39 75 23.8 --
409.46 0.942 3.8 -- 0.627 1.58 -- -- 0.338 9.87 3.025 70 0.762 --
614.26 1.16 3.77 0.652 -- -- -- -- 0.519 -- -- -- -- --
447.81 0.99 3.74 -- 1.72 -- -- -- 0.444 9.85 -- -- -- --
414.11 0.948 3.82 -- -- 1.97 -- -- 0.292 -- 2.35 75 23.8 --
625.47 1.17 3.78 -- -- -- -- -- 0.446 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 392.57 radiation 1.0 90 < th dose independent rect. 1 13
2 392.68 radiation 1.0 90 < th dose independent rect. 1 7
9 393.55 radiation 10.0 30 < th dose dependent rect. 1 8
13 393.86 atmosphere 1005.0 90 > th dose dependent rect. 5 4
16 394.56 atmosphere 1005.0 90 > th dose dependent rect. 5 6
25 396.06 atmosphere 1005.0 270 > th dose dependent rect. 5 2
32 396.50 atmosphere 1005.0 270 > th dose dependent rect. 3 6
37 396.86 atmosphere 1005.0 10 > th dose dependent rect. 6 3
39 396.93 radiation 10.0 30 < th dose dependent rect. 1 5
42 397.07 radiation 30.0 1440 < th dose independent rect. 2 5
43 397.12 radiation 10.0 10 < th dose independent rect. 1 5
54 397.77 temperature 10.0 90 > th dose dependent rect. 1 4
55 397.87 radiation 10.0 30 < th dose dependent sin 6 NA
58 398.06 temperature 10.0 270 > th dose dependent rect. 1 1
90 398.98 radiation 1.0 90 > th dose independent sin 5 NA
96 399.05 radiation 1.0 90 < th dose independent sin 6 NA
100 399.10 wind 9.0 90 < th dose independent rect. 1 4
101 399.11 temperature 10.0 90 > th dose independent rect. 1 4
103 399.11 temperature 30.0 90 < th dose independent rect. 1 4
104 399.11 humidity 50.0 90 > th dose independent rect. 1 4
107 399.11 atmosphere 995.0 90 > th dose independent rect. 1 4
108 399.11 atmosphere 1010.0 90 < th dose independent rect. 1 4
113 399.11 temperature 10.0 90 > th dose independent rect. 5 20
122 399.35 temperature 10.0 270 > th dose dependent rect. 9 19
129 399.82 precipitation 0.1 90 < th dose independent rect. 1 4
130 399.82 precipitation 0.1 90 < th dose dependent rect. 1 4
131 399.84 wind 1.0 90 > th dose independent rect. 5 20
133 399.91 precipitation 0.1 90 < th dose independent rect. 5 20
134 399.91 precipitation 0.1 90 < th dose dependent rect. 5 20
139 400.24 radiation 40.0 90 < th dose dependent rect. 14 11
143 400.39 atmosphere 1010.0 10 < th dose independent rect. 1 7
152 400.70 wind 9.0 90 < th dose dependent rect. 1 4
154 400.71 temperature 10.0 270 > th dose independent rect. 1 1
156 400.71 temperature 30.0 270 < th dose independent rect. 1 1
157 400.71 humidity 50.0 270 > th dose independent rect. 1 1
160 400.71 atmosphere 995.0 270 > th dose independent rect. 1 1
161 400.71 atmosphere 1010.0 270 < th dose independent rect. 1 1
163 400.71 radiation 1.0 270 < th dose independent rect. 1 1
168 400.71 precipitation 0.1 270 < th dose independent rect. 1 1
169 400.71 temperature 10.0 270 > th dose independent rect. 2 23
170 400.71 radiation 1.0 270 < th dose dependent rect. 1 1
175 400.71 precipitation 0.1 270 < th dose dependent rect. 1 1
176 400.74 wind 9.0 270 < th dose independent rect. 1 1
183 400.85 temperature 10.0 270 > th dose dependent rect. 10 17
204 401.03 wind 9.0 1440 < th dose independent rect. 2 5
207 401.03 temperature 10.0 1440 > th dose independent rect. 2 5
211 401.03 temperature 30.0 1440 < th dose independent rect. 2 5
218 401.03 humidity 50.0 1440 > th dose independent rect. 2 5
224 401.03 atmosphere 995.0 1440 > th dose independent rect. 2 5
235 401.03 temperature 10.0 1440 > th dose independent rect. 7 19
241 401.11 temperature 30.0 90 < th dose dependent rect. 5 20
259 401.50 humidity 50.0 90 > th dose dependent rect. 1 4
281 401.71 temperature 10.0 270 > th dose independent rect. 3 21
297 401.85 wind 1.0 270 > th dose independent rect. 1 1
303 401.95 atmosphere 1015.0 90 < th dose dependent rect. 1 4
306 401.99 precipitation 0.1 270 < th dose independent rect. 3 21
307 401.99 precipitation 0.1 270 < th dose dependent rect. 3 21
309 402.03 wind 9.0 90 < th dose independent rect. 5 20
322 402.32 humidity 50.0 10 > th dose dependent rect. 1 5
327 402.37 radiation 40.0 270 < th dose independent rect. 13 11
344 402.73 wind 9.0 270 < th dose dependent rect. 1 1
355 402.92 temperature 15.0 90 > th dose independent rect. 1 14
369 403.11 temperature 30.0 270 < th dose dependent rect. 3 21
391 403.17 wind 9.0 10 < th dose independent rect. 6 19
406 403.27 atmosphere 1015.0 10 < th dose dependent rect. 1 5
431 403.57 temperature 10.0 270 > th dose dependent rect. 23 5
434 403.65 atmosphere 995.0 90 > th dose independent rect. 5 20
437 403.66 humidity 80.0 10 > th dose dependent rect. 1 10
451 403.86 humidity 50.0 270 > th dose dependent rect. 1 1
467 403.99 precipitation 0.1 270 < th dose independent rect. 2 23
468 403.99 precipitation 0.1 270 < th dose dependent rect. 2 23
473 404.07 atmosphere 1015.0 270 < th dose dependent rect. 1 2
490 404.33 wind 7.0 90 < th dose independent rect. 1 14
493 404.37 humidity 50.0 10 > th dose independent rect. 6 19
511 404.56 wind 9.0 270 < th dose independent rect. 3 21
515 404.62 atmosphere 1015.0 90 < th dose independent rect. 5 20
522 404.69 atmosphere 995.0 90 > th dose dependent rect. 1 4
534 404.86 humidity 50.0 90 > th dose independent rect. 5 20
559 405.12 temperature 30.0 90 < th dose independent rect. 5 20
560 405.13 temperature 15.0 270 > th dose independent rect. 9 10
618 405.51 humidity 90.0 270 < th dose independent rect. 6 1
630 405.71 wind 1.0 90 > th dose independent rect. 1 4
734 406.04 atmosphere 995.0 90 > th dose independent rect. 1 14
755 406.19 atmosphere 1010.0 10 < th dose independent rect. 1 14
780 406.34 atmosphere 995.0 270 > th dose dependent rect. 1 1
822 406.40 humidity 50.0 270 > th dose independent rect. 3 21
831 406.47 radiation 30.0 10 < th dose dependent rect. 6 19
895 406.75 wind 9.0 270 < th dose independent rect. 9 10
909 406.82 temperature 15.0 10 > th dose dependent rect. 10 20
933 406.96 humidity 90.0 30 > th dose independent rect. 1 9
974 407.07 wind 1.0 270 > th dose independent rect. 9 10