Os04g0548400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0548400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 113 | 0.499 | 8.96 | -0.797 | 1.4 | -2.11 | 1.01 | -0.509 | -0.0577 | 6.58 | 0.05165 | 37 | 4.9 | -- |
| 113.76 | 0.497 | 8.96 | -0.818 | 1.41 | -2.08 | 1.1 | -- | -0.0569 | 6.66 | 6.5e-05 | 39 | 4.91 | -- |
| 115.2 | 0.5 | 8.96 | -0.772 | 1.42 | -2.12 | -- | -0.584 | -0.0577 | 6.52 | 0.05 | 38 | 4.82 | -- |
| 116.85 | 0.503 | 8.96 | -0.764 | 1.42 | -2.07 | -- | -- | -0.055 | 6.65 | 0.05 | 39 | 4.81 | -- |
| 168.24 | 0.607 | 8.99 | -0.721 | -- | -2.31 | -- | -0.835 | -0.0365 | -- | 1.527 | 33 | 7.23 | -- |
| 177.67 | 0.625 | 8.92 | -0.703 | 2.65 | -- | 1.05 | -- | -0.00259 | 10.3 | -- | -- | -- | -- |
| 182.11 | 0.632 | 8.92 | -0.661 | 2.64 | -- | -- | -- | 0.000326 | 10.3 | -- | -- | -- | -- |
| 171.79 | 0.613 | 9 | -0.736 | -- | -2.31 | -- | -- | -0.0401 | -- | 1.527 | 33 | 7.23 | -- |
| 132.84 | 0.537 | 8.95 | -- | 1.47 | -2.05 | -- | -- | 0.0199 | 6.79 | 0.05 | 39 | 4.61 | -- |
| 608.17 | 1.15 | 8.99 | -0.703 | -- | -- | -- | -- | -0.00776 | -- | -- | -- | -- | -- |
| 193.62 | 0.651 | 8.9 | -- | 2.65 | -- | -- | -- | 0.0739 | 10.4 | -- | -- | -- | -- |
| 184.92 | 0.635 | 8.98 | -- | -- | -2.3 | -- | -- | 0.0456 | -- | 1.29 | 17 | 7.04 | -- |
| 621.19 | 1.16 | 8.97 | -- | -- | -- | -- | -- | 0.0702 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 111.21 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 3 | 113.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 4 | 114.20 | temperature | 15.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 5 | 114.48 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 19 | 9 |
| 6 | 115.55 | radiation | 1.0 | 30 | < th | dose dependent | sin | 11 | NA |
| 7 | 116.08 | wind | 7.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 12 | 117.48 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 19 | 10 |
| 13 | 117.50 | temperature | 10.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 14 | 117.50 | temperature | 30.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 15 | 117.50 | humidity | 50.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 17 | 117.50 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 19 | 9 |
| 18 | 117.50 | radiation | 1.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 24 | 117.50 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 25 | 117.50 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 31 | 118.36 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 15 |
| 32 | 118.57 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 15 |
| 33 | 118.57 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 15 |
| 37 | 119.14 | radiation | 1.0 | 30 | < th | dose independent | sin | 11 | NA |
| 38 | 119.25 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 5 | 22 |
| 39 | 119.38 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 41 | 119.49 | radiation | 1.0 | 30 | > th | dose independent | sin | 11 | NA |
| 45 | 120.08 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 19 | 9 |
| 46 | 120.08 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 19 | 9 |
| 58 | 121.14 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 62 | 121.53 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 3 | 3 |
| 63 | 121.53 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 66 | 121.72 | wind | 9.0 | 10 | < th | dose dependent | rect. | 19 | 10 |
| 68 | 121.77 | wind | 9.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 71 | 122.04 | wind | 9.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 73 | 122.23 | wind | 7.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 81 | 122.63 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 2 |
| 85 | 122.76 | radiation | 1.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 87 | 122.79 | wind | 7.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 90 | 122.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 92 | 122.99 | temperature | 30.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 93 | 122.99 | humidity | 50.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 96 | 122.99 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 3 | 3 |
| 97 | 122.99 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 98 | 122.99 | radiation | 20.0 | 270 | < th | dose independent | rect. | 3 | 3 |
| 101 | 122.99 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 109 | 123.30 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 20 | 9 |
| 113 | 123.48 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 115 | 123.59 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 22 |
| 116 | 123.61 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 9 | 20 |
| 119 | 123.75 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 139 | 123.89 | wind | 7.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 154 | 124.28 | wind | 7.0 | 10 | < th | dose independent | rect. | 19 | 10 |
| 160 | 124.39 | humidity | 60.0 | 90 | > th | dose dependent | rect. | 11 | 17 |
| 164 | 124.55 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 167 | 124.60 | wind | 9.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 172 | 124.74 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 5 |
| 175 | 124.74 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 184 | 124.85 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 187 | 124.91 | wind | 9.0 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 191 | 124.95 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 192 | 124.97 | humidity | 60.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 193 | 124.98 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 194 | 124.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 197 | 124.98 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 198 | 124.98 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 5 |
| 199 | 124.98 | temperature | 10.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 227 | 125.56 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 240 | 125.83 | temperature | 20.0 | 90 | > th | dose independent | rect. | 9 | 19 |
| 276 | 126.36 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 282 | 126.40 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 9 | 19 |
| 284 | 126.41 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 10 |
| 290 | 126.47 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 15 |
| 316 | 126.71 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 5 |
| 336 | 126.83 | wind | 9.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 341 | 126.89 | radiation | 1.0 | 10 | > th | dose independent | rect. | 17 | 16 |
| 354 | 127.06 | atmosphere | 1010.0 | 10 | < th | dose independent | rect. | 20 | 9 |
| 361 | 127.10 | temperature | 10.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 362 | 127.10 | temperature | 30.0 | 10 | < th | dose independent | rect. | 19 | 10 |
| 363 | 127.10 | humidity | 50.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 365 | 127.10 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 19 | 10 |
| 366 | 127.10 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 10 |
| 371 | 127.10 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 14 |
| 373 | 127.10 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 14 |
| 378 | 127.17 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 379 | 127.17 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 380 | 127.19 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 14 |
| 382 | 127.19 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 14 |
| 387 | 127.30 | wind | 5.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 392 | 127.34 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 4 |
| 394 | 127.34 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 404 | 127.47 | temperature | 15.0 | 10 | > th | dose independent | rect. | 9 | 20 |
| 424 | 127.55 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 426 | 127.55 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 427 | 127.55 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 429 | 127.55 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 430 | 127.55 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 461 | 127.73 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 15 |
| 463 | 127.75 | wind | 9.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 478 | 127.88 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 19 | 13 |
| 508 | 128.00 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 4 |
| 516 | 128.06 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 6 | 21 |
| 522 | 128.17 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 9 | 19 |
| 524 | 128.17 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 9 | 19 |
| 530 | 128.26 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 543 | 128.38 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 548 | 128.42 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 9 | 20 |
| 553 | 128.45 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 15 |
| 574 | 128.56 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 583 | 128.64 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 21 |
| 625 | 128.93 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 14 | 17 |
| 626 | 128.93 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 14 | 17 |
| 722 | 129.56 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 4 |
| 778 | 129.81 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 4 |
| 779 | 129.81 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 5 | 4 |
| 780 | 129.81 | wind | 9.0 | 10 | < th | dose dependent | rect. | 9 | 20 |
| 788 | 129.85 | wind | 9.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 796 | 129.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 797 | 129.93 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 7 | 7 |
| 798 | 129.93 | atmosphere | 1015.0 | 270 | < th | dose independent | rect. | 7 | 7 |
| 800 | 129.93 | temperature | 10.0 | 270 | > th | dose independent | rect. | 14 | 17 |
| 856 | 130.46 | temperature | 20.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 861 | 130.49 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 7 | 7 |
| 863 | 130.49 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 7 | 7 |
| 909 | 130.75 | wind | 9.0 | 90 | < th | dose dependent | rect. | 11 | 17 |
| 982 | 131.09 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 4 |