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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0548100

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Disease resistance protein family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.73 (0.0438) R2 : 0.435
β1 : 1.19 (0.166) R2dD : 0.0735 R2D : 0.0637
β2 : 1.39 (0.112) R2dC : 0.196 R2C : 0.19
β3 : -0.794 (0.139) R2dE : 0.0501 R2E : 0.126
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.647 (0.0995) R2dN8 : 0.0813 R2N8 : 0.0682
σ : 0.803
deviance : 297.48
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_____
C
peak time of C : 19.2
E
wheather : temperature
threshold : 21.36
memory length : 918
response mode : < th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
284.51 0.793 4.7 1.34 1.42 -1 1.95 -0.928 0.7 19.1 20.4 1024 -- --
286.11 0.788 4.72 1.26 1.4 -0.758 1.9 -- 0.69 19.2 21.3 959 -- --
294.33 0.799 4.69 1.36 1.42 -1.02 -- -1.12 0.712 19.2 20.31 1012 -- --
297.48 0.803 4.73 1.19 1.39 -0.794 -- -- 0.647 19.2 21.36 918 -- --
389.99 0.92 4.67 1.38 -- -1.13 -- -1.26 0.632 -- 21.2 782 -- --
305.83 0.82 4.68 1.54 1.47 -- 2.08 -- 0.857 19.4 -- -- -- --
317.5 0.834 4.68 1.49 1.47 -- -- -- 0.86 19.5 -- -- -- --
356.42 0.879 4.68 1.15 -- -1.38 -- -- 0.638 -- 28.66 487 -- --
323.6 0.838 4.79 -- 1.54 -1.14 -- -- 0.476 19.4 21.1 3163 -- --
432.97 0.972 4.65 1.46 -- -- -- -- 0.837 -- -- -- -- --
375.79 0.907 4.72 -- 1.46 -- -- -- 0.694 19.5 -- -- -- --
395.73 0.927 4.71 -- -- -1.54 -- -- 0.571 -- 28.6 483 -- --
489.55 1.03 4.68 -- -- -- -- -- 0.674 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 273.55 atmosphere 1005 30 > th dose dependent rect. 9 14
5 275.57 atmosphere 1005 30 > th dose dependent rect. 7 16
6 275.66 temperature 30 720 < th dose dependent rect. 24 11
11 276.24 temperature 10 720 > th dose dependent rect. 2 7
12 276.32 temperature 25 720 < th dose dependent rect. 4 7
38 277.43 temperature 15 720 > th dose dependent rect. 2 5
39 277.44 temperature 20 720 > th dose independent rect. 5 2
47 277.71 temperature 20 720 > th dose independent rect. 2 5
53 277.87 temperature 20 720 > th dose dependent rect. 5 2
57 277.95 temperature 20 720 < th dose independent rect. 24 7
69 278.22 temperature 15 720 > th dose dependent rect. 4 5
70 278.25 temperature 25 720 < th dose dependent sin 5 NA
78 278.48 temperature 20 720 < th dose independent rect. 24 9
105 278.85 temperature 15 270 > th dose dependent rect. 3 14
117 279.05 temperature 25 720 < th dose dependent rect. 4 1
119 279.07 temperature 20 720 < th dose independent rect. 1 2
126 279.17 temperature 20 720 > th dose independent rect. 22 9
130 279.20 temperature 20 10 > th dose dependent rect. 2 5
152 279.42 temperature 20 720 > th dose independent rect. 5 9
174 279.65 temperature 25 720 < th dose dependent rect. 1 1
182 279.76 temperature 15 720 > th dose dependent rect. 2 11
183 279.78 temperature 15 720 > th dose dependent rect. 23 8
192 279.91 temperature 20 720 < th dose independent rect. 5 2
205 280.01 temperature 15 10 > th dose dependent rect. 6 14
257 280.50 temperature 10 270 > th dose dependent sin 1 NA
263 280.57 temperature 30 270 < th dose dependent rect. 7 6
265 280.60 temperature 20 720 < th dose independent sin 7 NA
284 280.74 temperature 10 720 > th dose dependent rect. 23 15
330 280.95 temperature 15 720 > th dose dependent rect. 23 10
348 281.11 atmosphere 1005 10 > th dose dependent rect. 9 10
353 281.16 temperature 10 720 > th dose dependent sin 6 NA
369 281.25 temperature 30 720 < th dose dependent rect. 7 2
388 281.37 temperature 20 720 > th dose independent rect. 2 15
408 281.53 temperature 30 270 < th dose independent rect. 6 22
416 281.59 temperature 20 720 > th dose independent rect. 19 14
428 281.65 temperature 20 10 > th dose dependent rect. 2 18
430 281.69 temperature 20 720 > th dose independent rect. 2 12
467 281.90 atmosphere 1005 270 > th dose dependent rect. 7 12
485 282.04 temperature 20 720 > th dose independent rect. 2 1
531 282.29 temperature 25 4320 > th dose independent rect. 1 1
568 282.49 temperature 20 720 > th dose independent sin 8 NA
576 282.52 atmosphere 1005 10 > th dose dependent sin 20 NA
590 282.61 temperature 30 720 < th dose independent rect. 7 5
602 282.64 temperature 20 720 > th dose independent rect. 21 17
628 282.76 temperature 30 270 < th dose independent rect. 7 15
661 282.92 temperature 20 720 > th dose independent rect. 4 13
668 282.94 temperature 30 270 < th dose independent rect. 7 19
697 283.09 temperature 30 270 < th dose independent rect. 7 12
706 283.10 temperature 20 270 > th dose dependent rect. 23 18
737 283.26 temperature 10 30 > th dose dependent rect. 23 23
794 283.55 temperature 30 90 < th dose independent rect. 9 14
843 283.77 temperature 30 270 < th dose dependent rect. 7 12
853 283.82 temperature 10 720 > th dose dependent rect. 19 14