Os04g0547600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os04g0547600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 270.65 | 0.773 | 3.44 | 1.08 | 0.278 | -1.39 | 0.174 | -0.902 | 0.116 | 1.13 | -11.47 | 6072 | -- | -- |
| 271.31 | 0.767 | 3.4 | 1.27 | 0.277 | -1.34 | 0.186 | -- | 0.168 | 1.18 | -9.95 | 6006 | -- | -- |
| 270.76 | 0.766 | 3.44 | 1.07 | 0.277 | -1.39 | -- | -0.9 | 0.114 | 0.978 | -6.857 | 6050 | -- | -- |
| 271.44 | 0.767 | 3.41 | 1.26 | 0.274 | -1.34 | -- | -- | 0.166 | 1.03 | -5.407 | 6017 | -- | -- |
| 275.54 | 0.773 | 3.43 | 1.09 | -- | -1.37 | -- | -0.826 | 0.12 | -- | -6.751 | 6048 | -- | -- |
| 301.55 | 0.814 | 3.47 | 0.618 | 0.253 | -- | 0.107 | -- | -0.135 | 1.18 | -- | -- | -- | -- |
| 301.59 | 0.813 | 3.47 | 0.614 | 0.252 | -- | -- | -- | -0.135 | 1.03 | -- | -- | -- | -- |
| 276.11 | 0.774 | 3.4 | 1.27 | -- | -1.32 | -- | -- | 0.169 | -- | -4.192 | 6040 | -- | -- |
| 298.08 | 0.809 | 3.46 | -- | 0.103 | -1.13 | -- | -- | -0.07 | 17.6 | -14.91 | 2093 | -- | -- |
| 305.55 | 0.817 | 3.47 | 0.624 | -- | -- | -- | -- | -0.13 | -- | -- | -- | -- | -- |
| 311.54 | 0.826 | 3.49 | -- | 0.263 | -- | -- | -- | -0.204 | 1.13 | -- | -- | -- | -- |
| 298.56 | 0.807 | 3.46 | -- | -- | -1.06 | -- | -- | -0.0794 | -- | -4.192 | 6040 | -- | -- |
| 315.82 | 0.829 | 3.49 | -- | -- | -- | -- | -- | -0.199 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 270.18 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 1 | 1 |
| 4 | 270.28 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 24 | 1 |
| 18 | 270.78 | temperature | 25.0 | 4320 | < th | dose dependent | rect. | 3 | 1 |
| 32 | 271.09 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 3 | 1 |
| 34 | 271.12 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 40 | 271.22 | wind | 5.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 195 | 271.92 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 5 |
| 234 | 272.02 | temperature | 10.0 | 4320 | > th | dose dependent | sin | 11 | NA |
| 247 | 272.06 | temperature | 30.0 | 4320 | < th | dose dependent | sin | 11 | NA |
| 260 | 272.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 291 | 272.18 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 292 | 272.18 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 394 | 272.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 396 | 272.44 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 4 |
| 501 | 272.70 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 571 | 272.85 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 593 | 272.89 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 10 | 9 |
| 729 | 273.17 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 759 | 273.20 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 3 |
| 807 | 273.28 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 831 | 273.31 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 832 | 273.31 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 7 |
| 930 | 273.46 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 10 |
| 942 | 273.47 | atmosphere | 1000.0 | 43200 | < th | dose dependent | sin | 22 | NA |
| 973 | 273.52 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 10 |