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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0546900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Non-protein coding transcript, unclassifiable transcript.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.56 (0.0438) R2 : 0.278
β1 : -0.801 (0.161) R2dD : 0.0407 R2D : 0.0105
β2 : -- (--) R2dC : -- R2C : --
β3 : 1.71 (0.189) R2dE : 0.132 R2E : 0.156
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.646 (0.0947) R2dN8 : 0.103 R2N8 : 0.0897
σ : 0.816
deviance : 307.28
__
_____
C
peak time of C : --
E
wheather : humidity
threshold : 75.07
memory length : 1388
response mode : > th
dose dependency : dose independent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
286.2 0.795 4.59 -1.24 1.11 1.47 2.18 2.8 -0.715 19.9 84 675 -- --
302.39 0.81 4.6 -1.06 1.13 1.45 0.786 -- -0.692 19.8 84.65 640 -- --
296.01 0.801 4.6 -1.19 1.18 1.48 -- 2.03 -0.719 19.3 84.01 591 -- --
304.18 0.812 4.6 -1.08 1.13 1.44 -- -- -0.692 19.7 84.73 634 -- --
301.18 0.808 4.59 -1.45 -- 1.6 -- 2.81 -0.738 -- 84.89 1400 -- --
356.88 0.886 4.6 -0.968 0.215 -- 0.815 -- -0.798 19.7 -- -- -- --
358.72 0.887 4.6 -0.987 0.219 -- -- -- -0.796 19.2 -- -- -- --
307.28 0.816 4.56 -0.801 -- 1.71 -- -- -0.646 -- 75.07 1388 -- --
325.31 0.84 4.6 -- 1.17 1.78 -- -- -0.673 20.3 77.88 796 -- --
361.26 0.888 4.59 -0.991 -- -- -- -- -0.8 -- -- -- -- --
384.4 0.917 4.57 -- 0.23 -- -- -- -0.686 18.9 -- -- -- --
323.77 0.838 4.54 -- -- 1.81 -- -- -0.555 -- 75 1380 -- --
387.18 0.918 4.57 -- -- -- -- -- -0.69 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 289.99 humidity 90 720 < th dose dependent rect. 18 16
2 290.57 humidity 60 1440 > th dose dependent rect. 22 16
4 291.17 humidity 70 1440 > th dose dependent rect. 1 14
6 291.23 humidity 60 1440 > th dose dependent sin 6 NA
9 291.31 humidity 70 1440 > th dose dependent sin 4 NA
11 291.32 humidity 80 720 > th dose dependent rect. 6 18
12 291.42 humidity 90 1440 < th dose dependent rect. 5 3
13 291.42 humidity 50 720 > th dose dependent rect. 17 17
14 291.47 humidity 90 1440 < th dose dependent sin 8 NA
23 291.79 humidity 80 1440 > th dose independent rect. 24 14
28 291.81 humidity 70 720 > th dose dependent rect. 15 19
30 291.85 humidity 80 1440 > th dose independent sin 4 NA
38 292.21 humidity 80 1440 < th dose independent sin 5 NA
44 292.30 humidity 80 1440 < th dose independent rect. 1 13
73 292.75 humidity 80 720 > th dose dependent rect. 3 21
89 293.05 humidity 70 720 > th dose dependent rect. 3 23
91 293.06 humidity 50 1440 > th dose dependent rect. 6 2
104 293.29 humidity 70 720 > th dose dependent rect. 16 22
106 293.31 humidity 70 720 > th dose dependent rect. 1 23
129 293.58 humidity 90 720 < th dose dependent sin 11 NA
168 294.06 humidity 90 1440 < th dose dependent rect. 21 15
227 294.57 humidity 70 720 > th dose dependent no NA NA
268 294.92 humidity 70 14400 > th dose independent rect. 19 13
271 294.93 humidity 80 1440 > th dose independent rect. 21 18
325 295.55 humidity 80 720 > th dose independent rect. 15 19
387 296.13 humidity 90 1440 < th dose dependent rect. 2 7
394 296.18 humidity 80 720 > th dose independent rect. 3 23
403 296.24 humidity 80 720 > th dose independent rect. 11 23
411 296.30 humidity 80 720 > th dose independent rect. 16 22
420 296.37 wind 5 43200 < th dose dependent rect. 23 6
437 296.51 humidity 80 720 > th dose independent rect. 1 23
442 296.53 wind 5 43200 < th dose dependent rect. 24 4
457 296.64 humidity 70 720 > th dose dependent sin 14 NA
513 297.07 humidity 70 720 > th dose dependent rect. 21 23
518 297.10 humidity 80 720 > th dose independent rect. 6 23
534 297.20 humidity 80 720 > th dose independent rect. 6 20
538 297.23 humidity 80 720 < th dose independent rect. 15 23
553 297.34 humidity 80 720 > th dose independent rect. 6 18
579 297.48 humidity 80 720 < th dose independent rect. 15 21
594 297.54 humidity 80 720 > th dose independent no NA NA
609 297.61 wind 9 43200 < th dose dependent rect. 24 4
642 297.85 wind 1 43200 > th dose dependent rect. 24 4
663 297.94 wind 1 43200 > th dose dependent rect. 23 7
678 298.06 wind 9 43200 < th dose dependent rect. 23 7
732 298.47 humidity 80 720 > th dose independent rect. 23 23
749 298.59 humidity 80 720 < th dose independent rect. 23 23
753 298.61 humidity 90 720 < th dose dependent rect. 19 6
756 298.62 humidity 80 720 < th dose independent rect. 13 23
776 298.71 humidity 80 720 < th dose independent rect. 6 21
796 298.81 humidity 70 720 > th dose dependent rect. 17 8
825 298.92 humidity 80 720 > th dose dependent rect. 18 6
833 298.97 humidity 80 720 > th dose independent rect. 21 23
847 299.01 humidity 80 720 < th dose independent rect. 9 23
870 299.10 radiation 20 4320 < th dose dependent rect. 7 1
947 299.44 humidity 80 720 < th dose independent no NA NA
953 299.46 wind 3 14400 > th dose independent rect. 14 1
961 299.49 humidity 80 720 < th dose independent rect. 11 23