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Os04g0546300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to GMPK2=PROTEIN kinase.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0217) R2 : 0.665
β1 : -- (--) R2dD : -- R2D : --
β2 : 1.53 (0.0519) R2dC : 0.641 R2C : 0.629
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.28 (0.0455) R2dN8 : 0.036 R2N8 : 0.024
σ : 0.408
deviance : 76.04
__
_____
C
peak time of C : 22.8
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
57.24 0.355 10.4 -0.215 1.47 0.713 -0.682 -0.817 -0.445 22.6 23.24 1338 -- --
57.56 0.353 10.4 0.0269 1.49 0.629 -0.676 -- -0.386 22.6 22.78 1351 -- --
59.09 0.358 10.4 -0.228 1.48 0.721 -- -0.939 -0.454 22.6 22.9 1338 -- --
59.57 0.359 10.4 0.0493 1.49 0.632 -- -- -0.389 22.6 22.6 1398 -- --
155.06 0.58 10.4 -0.458 -- 1.63 -- -2.1 -0.53 -- 23.68 872 -- --
72.41 0.399 10.4 0.248 1.53 -- -0.634 -- -0.252 22.7 -- -- -- --
74.08 0.403 10.4 0.273 1.53 -- -- -- -0.25 22.8 -- -- -- --
158.01 0.585 10.4 -0.216 -- 1.95 -- -- -0.547 -- -5.052 823 -- --
59.46 0.359 10.4 -- 1.51 0.665 -- -- -0.397 22.8 22.55 1644 -- --
218.66 0.691 10.3 0.303 -- -- -- -- -0.241 -- -- -- -- --
76.04 0.408 10.4 -- 1.53 -- -- -- -0.28 22.8 -- -- -- --
158.97 0.587 10.4 -- -- 1.44 -- -- -0.493 -- 21.4 852 -- --
221.08 0.694 10.3 -- -- -- -- -- -0.275 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 44.24 temperature 10.0 270 > th dose dependent rect. 1 16
14 46.89 temperature 10.0 10 > th dose dependent rect. 2 18
32 48.38 temperature 15.0 270 > th dose independent rect. 1 16
52 49.21 humidity 50.0 270 > th dose dependent rect. 5 8
58 49.57 radiation 1.0 270 < th dose independent rect. 5 20
63 49.90 radiation 1.0 270 < th dose dependent rect. 5 20
68 50.28 humidity 60.0 270 > th dose dependent rect. 6 18
72 50.43 temperature 30.0 90 < th dose dependent rect. 6 7
82 50.66 temperature 30.0 270 < th dose independent rect. 5 8
84 50.68 humidity 50.0 270 > th dose dependent rect. 5 20
89 50.78 temperature 15.0 1440 > th dose independent rect. 7 9
118 51.21 humidity 50.0 270 > th dose dependent rect. 18 18
187 52.18 humidity 70.0 270 > th dose independent rect. 18 17
189 52.23 temperature 30.0 270 < th dose independent rect. 18 18
201 52.34 precipitation 0.1 270 < th dose independent rect. 13 16
202 52.34 precipitation 0.1 270 < th dose dependent rect. 13 16
203 52.37 temperature 30.0 270 < th dose independent rect. 17 20
211 52.52 humidity 60.0 90 > th dose dependent rect. 9 17
224 52.65 wind 7.0 270 < th dose independent rect. 1 16
255 52.87 precipitation 0.1 270 < th dose independent rect. 1 16
257 52.87 precipitation 0.1 270 < th dose dependent rect. 1 16
273 53.00 temperature 30.0 90 < th dose dependent rect. 6 20
277 53.04 temperature 10.0 270 > th dose dependent rect. 23 7
285 53.09 temperature 10.0 270 > th dose independent rect. 5 8
286 53.09 atmosphere 995.0 270 > th dose independent rect. 5 8
287 53.09 atmosphere 1015.0 270 < th dose independent rect. 5 8
288 53.09 temperature 10.0 270 > th dose independent rect. 13 16
294 53.14 humidity 70.0 270 > th dose independent rect. 6 18
301 53.16 wind 9.0 270 < th dose independent rect. 13 16
302 53.18 radiation 10.0 270 < th dose independent rect. 16 9
310 53.22 humidity 50.0 270 > th dose independent rect. 17 8
313 53.24 temperature 30.0 270 < th dose dependent rect. 5 18
314 53.25 radiation 20.0 270 < th dose dependent rect. 16 9
315 53.26 wind 1.0 270 > th dose independent rect. 4 9
325 53.35 temperature 30.0 90 < th dose independent rect. 6 20
336 53.42 precipitation 0.1 270 < th dose independent rect. 5 8
338 53.42 precipitation 0.1 270 < th dose dependent rect. 5 8
339 53.43 temperature 10.0 270 > th dose independent rect. 17 8
344 53.43 atmosphere 1015.0 270 < th dose independent rect. 1 16
360 53.51 humidity 50.0 270 > th dose independent rect. 5 8
363 53.54 temperature 15.0 270 > th dose independent rect. 10 8
370 53.55 wind 9.0 270 < th dose independent rect. 17 8
386 53.62 temperature 10.0 270 > th dose dependent rect. 23 9
413 53.75 atmosphere 995.0 270 > th dose independent rect. 17 8
421 53.80 temperature 10.0 270 > th dose dependent rect. 11 7
459 53.97 wind 9.0 270 < th dose independent rect. 5 8
464 53.99 atmosphere 1010.0 270 < th dose independent rect. 11 7
470 54.01 atmosphere 1010.0 10 < th dose independent rect. 2 18
501 54.12 atmosphere 995.0 10 > th dose dependent rect. 6 9
511 54.19 humidity 80.0 270 > th dose independent rect. 6 7
525 54.22 precipitation 0.1 90 < th dose independent rect. 15 15
528 54.22 precipitation 0.1 90 < th dose dependent rect. 15 15
534 54.25 temperature 30.0 270 < th dose dependent rect. 18 18
541 54.27 humidity 90.0 270 < th dose independent rect. 11 7
552 54.31 temperature 30.0 270 < th dose independent rect. 17 8
577 54.40 atmosphere 995.0 270 > th dose independent rect. 1 16
579 54.41 precipitation 0.1 270 < th dose independent rect. 17 8
581 54.41 precipitation 0.1 270 < th dose dependent rect. 17 8
583 54.42 humidity 70.0 90 > th dose independent rect. 9 17
598 54.48 radiation 40.0 90 < th dose independent rect. 14 16
599 54.48 wind 7.0 10 < th dose independent rect. 2 17
620 54.57 radiation 40.0 10 < th dose independent rect. 15 15
635 54.62 temperature 10.0 10 > th dose independent rect. 6 9
637 54.62 atmosphere 995.0 10 > th dose independent rect. 6 9
638 54.62 atmosphere 1015.0 10 < th dose independent rect. 6 9
639 54.62 temperature 10.0 10 > th dose independent rect. 15 15
648 54.66 precipitation 0.1 10 < th dose independent rect. 6 9
649 54.66 precipitation 0.1 10 < th dose dependent rect. 6 9
669 54.76 wind 9.0 90 < th dose dependent rect. 2 17
703 54.88 radiation 1.0 270 > th dose independent sin 19 NA
751 54.98 humidity 50.0 270 > th dose dependent rect. 17 7
798 55.09 wind 9.0 270 < th dose dependent rect. 24 17
801 55.11 wind 9.0 10 < th dose independent rect. 15 15
808 55.12 temperature 10.0 1440 > th dose independent rect. 16 15
838 55.18 atmosphere 995.0 270 > th dose independent rect. 13 16
840 55.19 wind 1.0 270 > th dose independent rect. 17 8
869 55.25 radiation 40.0 270 < th dose independent rect. 18 17
878 55.28 temperature 10.0 90 > th dose independent rect. 19 7
879 55.28 temperature 30.0 90 < th dose independent rect. 19 7
880 55.28 humidity 50.0 90 > th dose independent rect. 19 7
882 55.28 atmosphere 995.0 90 > th dose independent rect. 19 7
883 55.28 radiation 1.0 90 < th dose independent rect. 19 7
890 55.28 radiation 1.0 90 < th dose dependent rect. 19 7
898 55.29 wind 1.0 270 > th dose independent rect. 11 7
906 55.30 temperature 10.0 270 > th dose dependent rect. 10 23
907 55.31 wind 9.0 270 < th dose independent rect. 11 7
912 55.31 humidity 90.0 270 > th dose dependent rect. 6 17
914 55.32 wind 9.0 90 < th dose independent rect. 19 7
919 55.32 wind 9.0 270 < th dose dependent rect. 23 7
930 55.34 radiation 40.0 10 < th dose dependent rect. 14 16
933 55.36 precipitation 0.1 270 < th dose independent rect. 11 7
935 55.36 precipitation 0.1 270 < th dose dependent rect. 11 7
938 55.37 temperature 10.0 270 > th dose dependent rect. 12 17
980 55.48 precipitation 0.1 270 < th dose independent rect. 23 7
984 55.48 precipitation 0.1 270 < th dose dependent rect. 23 7
990 55.50 radiation 10.0 270 < th dose independent rect. 23 7
992 55.51 wind 7.0 270 < th dose independent rect. 23 7