Os04g0545200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Plastocyanin-like domain containing protein.
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Os04g0545200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Plastocyanin-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 41.5 | 0.303 | 11.6 | -0.562 | 0.897 | 0.974 | -0.601 | -0.853 | -0.512 | 20.8 | 25.4 | 12 | -- | -- |
| 41.74 | 0.301 | 11.6 | -0.473 | 0.895 | 0.886 | -0.564 | -- | -0.515 | 20.8 | 24.7 | 12 | -- | -- |
| 42.68 | 0.304 | 11.6 | -0.516 | 0.898 | 0.949 | -- | -0.626 | -0.507 | 20.8 | 25.37 | 12 | -- | -- |
| 42.71 | 0.304 | 11.6 | -0.468 | 0.889 | 0.885 | -- | -- | -0.548 | 20.8 | 23.72 | 13 | -- | -- |
| 65.31 | 0.376 | 11.6 | -0.68 | -- | 1.27 | -- | -0.978 | -0.592 | -- | 24.21 | 495 | -- | -- |
| 54.29 | 0.345 | 11.5 | -0.325 | 0.973 | -- | -0.456 | -- | -0.428 | 19.4 | -- | -- | -- | -- |
| 54.85 | 0.347 | 11.5 | -0.315 | 0.973 | -- | -- | -- | -0.429 | 19.4 | -- | -- | -- | -- |
| 65.77 | 0.378 | 11.5 | -0.549 | -- | 1.17 | -- | -- | -0.568 | -- | 24.06 | 498 | -- | -- |
| 47.79 | 0.324 | 11.5 | -- | 0.907 | 0.8 | -- | -- | -0.43 | 20.5 | 25.4 | 9 | -- | -- |
| 105.27 | 0.479 | 11.5 | -0.33 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 57.46 | 0.355 | 11.5 | -- | 0.976 | -- | -- | -- | -0.394 | 19.4 | -- | -- | -- | -- |
| 73.34 | 0.399 | 11.5 | -- | -- | 1.08 | -- | -- | -0.496 | -- | 24.2 | 465 | -- | -- |
| 108.15 | 0.485 | 11.5 | -- | -- | -- | -- | -- | -0.408 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 39.12 | temperature | 15 | 270 | > th | dose dependent | sin | 3 | NA |
| 10 | 39.71 | temperature | 20 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 11 | 39.87 | temperature | 20 | 10 | > th | dose dependent | rect. | 7 | 13 |
| 12 | 39.94 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 21 |
| 16 | 40.09 | temperature | 20 | 720 | > th | dose dependent | rect. | 1 | 10 |
| 18 | 40.10 | temperature | 20 | 30 | > th | dose dependent | rect. | 23 | 21 |
| 21 | 40.14 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 19 |
| 25 | 40.19 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 16 |
| 27 | 40.22 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 33 | 40.32 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 12 |
| 46 | 40.47 | temperature | 15 | 270 | > th | dose dependent | rect. | 6 | 11 |
| 52 | 40.52 | temperature | 30 | 90 | < th | dose dependent | sin | 0 | NA |
| 54 | 40.53 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 18 |
| 69 | 40.65 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 12 |
| 98 | 40.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 3 | 8 |
| 114 | 40.89 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 17 |
| 123 | 40.92 | temperature | 25 | 10 | > th | dose dependent | rect. | 21 | 23 |
| 181 | 41.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 23 | 17 |
| 246 | 41.39 | temperature | 20 | 720 | > th | dose dependent | rect. | 6 | 3 |
| 253 | 41.43 | temperature | 25 | 270 | > th | dose independent | sin | 3 | NA |
| 264 | 41.46 | temperature | 25 | 270 | < th | dose independent | sin | 3 | NA |
| 288 | 41.51 | temperature | 25 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 311 | 41.58 | temperature | 25 | 10 | > th | dose dependent | no | NA | NA |
| 323 | 41.59 | temperature | 25 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 369 | 41.69 | temperature | 30 | 720 | < th | dose dependent | rect. | 3 | 8 |
| 456 | 41.83 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 12 |
| 506 | 41.90 | temperature | 10 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 561 | 42.02 | temperature | 10 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 669 | 42.21 | temperature | 25 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 670 | 42.21 | temperature | 10 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 726 | 42.31 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 23 |
| 740 | 42.33 | temperature | 25 | 10 | > th | dose dependent | rect. | 10 | 23 |
| 751 | 42.37 | temperature | 25 | 270 | < th | dose independent | rect. | 3 | 15 |
| 809 | 42.46 | temperature | 30 | 10 | < th | dose dependent | rect. | 24 | 23 |
| 840 | 42.51 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 917 | 42.65 | temperature | 25 | 720 | > th | dose independent | rect. | 6 | 3 |
| 920 | 42.65 | temperature | 30 | 10 | < th | dose dependent | rect. | 5 | 13 |
| 951 | 42.70 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 14 |
| 953 | 42.71 | temperature | 25 | 720 | > th | dose independent | rect. | 1 | 10 |
| 997 | 42.78 | temperature | 25 | 720 | > th | dose independent | rect. | 3 | 8 |