Os04g0545000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to WRKY transcription factor 34.
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Os04g0545000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to WRKY transcription factor 34.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 122.26 | 0.52 | 5.82 | -3.39 | 0.745 | 1.06 | -0.47 | -11 | -0.0284 | 7.31 | 27.12 | 4316 | -- | -- |
| 137.23 | 0.55 | 5.53 | -1.01 | 0.666 | -0.641 | -0.572 | -- | 0.35 | 8.29 | 27.12 | 4316 | -- | -- |
| 122.76 | 0.516 | 5.83 | -3.49 | 0.741 | 1.13 | -- | -11.6 | -0.0336 | 7.2 | 27.39 | 4329 | -- | -- |
| 137.99 | 0.551 | 5.53 | -1.04 | 0.666 | -0.724 | -- | -- | 0.336 | 8.14 | 28.57 | 111 | -- | -- |
| 152 | 0.574 | 5.83 | -3.35 | -- | 1.08 | -- | -11.2 | 0.019 | -- | 27.49 | 4402 | -- | -- |
| 143.04 | 0.561 | 5.53 | -1.09 | 0.715 | -- | -0.51 | -- | 0.345 | 7.42 | -- | -- | -- | -- |
| 143.76 | 0.561 | 5.53 | -1.1 | 0.715 | -- | -- | -- | 0.346 | 7.39 | -- | -- | -- | -- |
| 156.13 | 0.582 | 5.54 | -0.974 | -- | -0.719 | -- | -- | 0.402 | -- | 25.2 | 424 | -- | -- |
| 165.09 | 0.602 | 5.51 | -- | 0.657 | -0.882 | -- | -- | 0.462 | 8.8 | 27.3 | 57 | -- | -- |
| 170.97 | 0.611 | 5.55 | -1.09 | -- | -- | -- | -- | 0.357 | -- | -- | -- | -- | -- |
| 175.66 | 0.62 | 5.5 | -- | 0.705 | -- | -- | -- | 0.468 | 7.49 | -- | -- | -- | -- |
| 180.46 | 0.626 | 5.51 | -- | -- | -0.856 | -- | -- | 0.532 | -- | 24.73 | 443 | -- | -- |
| 202.22 | 0.664 | 5.52 | -- | -- | -- | -- | -- | 0.478 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.07 | wind | 1.0 | 43200 | > th | dose independent | rect. | 4 | 2 |
| 3 | 110.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 5 | 111.88 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 6 | 112.14 | wind | 5.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 7 | 112.39 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 5 |
| 8 | 112.48 | humidity | 90.0 | 43200 | < th | dose dependent | rect. | 10 | 2 |
| 10 | 112.54 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 11 | 112.55 | wind | 5.0 | 14400 | < th | dose independent | rect. | 14 | 3 |
| 12 | 112.56 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 6 | 1 |
| 18 | 112.98 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 22 | 13 |
| 20 | 113.15 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 23 | 113.19 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 31 | 113.26 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 22 | 13 |
| 37 | 113.29 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 5 |
| 42 | 113.31 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 54 | 113.40 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 62 | 113.50 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 9 | 4 |
| 64 | 113.50 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 12 | 5 |
| 94 | 113.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 9 | 4 |
| 95 | 113.68 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 96 | 113.69 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 17 |
| 106 | 113.73 | wind | 5.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 145 | 113.97 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 154 | 114.04 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 159 | 114.08 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 8 | 2 |
| 162 | 114.09 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 180 | 114.17 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 198 | 114.21 | humidity | 90.0 | 43200 | > th | dose dependent | rect. | 9 | 8 |
| 204 | 114.23 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 233 | 114.34 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 9 | 2 |
| 236 | 114.35 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 277 | 114.47 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 11 | 6 |
| 283 | 114.49 | wind | 3.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 293 | 114.54 | humidity | 70.0 | 43200 | > th | dose independent | sin | 9 | NA |
| 296 | 114.55 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 14 | 1 |
| 300 | 114.56 | humidity | 70.0 | 43200 | < th | dose independent | sin | 9 | NA |
| 391 | 114.79 | humidity | 90.0 | 43200 | < th | dose independent | rect. | 11 | 3 |
| 404 | 114.82 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 11 | 6 |
| 437 | 114.91 | wind | 5.0 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 450 | 114.94 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 505 | 115.06 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 9 | 8 |
| 554 | 115.18 | temperature | 15.0 | 43200 | > th | dose dependent | sin | 1 | NA |
| 568 | 115.20 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 5 | 11 |
| 574 | 115.20 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 5 | 11 |
| 577 | 115.21 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 584 | 115.22 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 9 | 5 |
| 588 | 115.23 | humidity | 90.0 | 43200 | > th | dose independent | rect. | 11 | 6 |
| 589 | 115.23 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 5 | 11 |
| 593 | 115.24 | temperature | 30.0 | 43200 | < th | dose dependent | sin | 1 | NA |
| 595 | 115.24 | humidity | 80.0 | 43200 | > th | dose dependent | rect. | 9 | 5 |
| 597 | 115.24 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 23 | 16 |
| 600 | 115.25 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 637 | 115.28 | humidity | 80.0 | 43200 | < th | dose dependent | rect. | 20 | 19 |
| 673 | 115.33 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 674 | 115.33 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 17 | 21 |
| 736 | 115.39 | atmosphere | 1005.0 | 43200 | > th | dose independent | rect. | 3 | 1 |
| 768 | 115.43 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 4 | 9 |
| 785 | 115.45 | radiation | 20.0 | 43200 | < th | dose dependent | rect. | 13 | 1 |
| 905 | 115.56 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 936 | 115.59 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 973 | 115.62 | atmosphere | 1005.0 | 43200 | < th | dose independent | rect. | 3 | 1 |