Os04g0544400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os04g0544400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Tetratricopeptide-like helical domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = precipitation,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 155.05 | 0.585 | 12 | 0.03 | 2.06 | -1.66 | -0.825 | 2.34 | -1.07 | 19.7 | 0.6853 | 13323 | -- | -- |
| 156.66 | 0.583 | 12.1 | -0.161 | 2.04 | -1.04 | -0.835 | -- | -1.05 | 19.7 | 0.9624 | 16217 | -- | -- |
| 156.98 | 0.584 | 12 | 0.0473 | 2.05 | -1.65 | -- | 2.32 | -1.07 | 19.7 | 0.7063 | 13322 | -- | -- |
| 157.68 | 0.585 | 12.1 | -0.0999 | 2.03 | -1.04 | -- | -- | -1.04 | 19.7 | 1 | 13284 | -- | -- |
| 383.81 | 0.912 | 12 | 0.0311 | -- | -1.78 | -- | 2.52 | -1.1 | -- | 0.5 | 14071 | -- | -- |
| 179.03 | 0.627 | 12.1 | -0.526 | 2.05 | -- | -0.849 | -- | -0.953 | 19.7 | -- | -- | -- | -- |
| 181.07 | 0.63 | 12.1 | -0.505 | 2.05 | -- | -- | -- | -0.954 | 19.7 | -- | -- | -- | -- |
| 384.04 | 0.913 | 12 | -0.161 | -- | -1.08 | -- | -- | -1.08 | -- | 0.7881 | 14182 | -- | -- |
| 158.03 | 0.585 | 12.1 | -- | 2.05 | -1.07 | -- | -- | -1.04 | 19.7 | 1 | 13284 | -- | -- |
| 406.93 | 0.943 | 12 | -0.532 | -- | -- | -- | -- | -0.984 | -- | -- | -- | -- | -- |
| 187.78 | 0.641 | 12.1 | -- | 2.05 | -- | -- | -- | -0.898 | 19.7 | -- | -- | -- | -- |
| 384.64 | 0.913 | 12 | -- | -- | -1.15 | -- | -- | -1.07 | -- | 0.9065 | 14052 | -- | -- |
| 414.39 | 0.95 | 12 | -- | -- | -- | -- | -- | -0.925 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 154.42 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 13 |
| 3 | 154.44 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 13 |
| 4 | 154.44 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 13 |
| 18 | 155.09 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 1 | NA |
| 24 | 155.22 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 4 | 15 |
| 37 | 155.65 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 0 | NA |
| 38 | 155.65 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 0 | NA |
| 39 | 155.65 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 0 | NA |
| 67 | 155.92 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 2 |
| 68 | 155.92 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 2 |
| 69 | 155.92 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 2 |
| 81 | 156.03 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 16 | 4 |
| 101 | 156.11 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 6 |
| 170 | 156.47 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 23 | 20 |
| 171 | 156.48 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 172 | 156.48 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 5 |
| 199 | 156.56 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 1 | 17 |
| 200 | 156.56 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 1 | 17 |
| 237 | 156.68 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 1 | 17 |
| 293 | 156.85 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 20 | 1 |
| 306 | 156.88 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 21 | 22 |
| 315 | 156.92 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 1 |
| 326 | 156.97 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 14 | 23 |
| 353 | 157.06 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 20 |
| 368 | 157.09 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 23 |
| 389 | 157.16 | precipitation | 0.1 | 14400 | > th | dose dependent | no | NA | NA |
| 404 | 157.19 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 19 | 23 |
| 421 | 157.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 11 | 23 |
| 661 | 157.99 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 9 | 1 |
| 727 | 158.40 | wind | 5.0 | 14400 | > th | dose independent | rect. | 7 | 2 |
| 768 | 158.55 | radiation | 30.0 | 90 | < th | dose independent | rect. | 5 | 6 |
| 775 | 158.58 | wind | 5.0 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 776 | 158.59 | humidity | 90.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 795 | 158.66 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 21 | 1 |
| 846 | 158.88 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 5 | 2 |
| 855 | 158.91 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 5 | 2 |
| 877 | 159.02 | radiation | 40.0 | 90 | < th | dose independent | rect. | 5 | 18 |
| 919 | 159.24 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 6 | 8 |
| 978 | 159.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 14 | 23 |
| 979 | 159.52 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 14 | 23 |
| 981 | 159.52 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 14 | 23 |