Os04g0544100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to SET domain-containing protein SET104.
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Os04g0544100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to SET domain-containing protein SET104.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 20.23 | 0.211 | 10.6 | -0.431 | 0.342 | -0.435 | 0.355 | -0.246 | -0.177 | 2.9 | 25.38 | 94 | -- | -- |
| 20.31 | 0.21 | 10.6 | -0.448 | 0.34 | -0.4 | 0.285 | -- | -0.177 | 2.99 | 25.55 | 113 | -- | -- |
| 20.56 | 0.211 | 10.6 | -0.452 | 0.331 | -0.395 | -- | -0.0247 | -0.176 | 3.01 | 25.3 | 117 | -- | -- |
| 20.55 | 0.211 | 10.6 | -0.473 | 0.336 | -0.408 | -- | -- | -0.184 | 2.98 | 25.36 | 112 | -- | -- |
| 23.87 | 0.228 | 10.6 | -0.356 | -- | -0.414 | -- | -0.724 | -0.145 | -- | 25.97 | 2570 | -- | -- |
| 22.76 | 0.224 | 10.6 | -0.369 | 0.258 | -- | 0.267 | -- | -0.0998 | 3.11 | -- | -- | -- | -- |
| 22.99 | 0.225 | 10.6 | -0.375 | 0.259 | -- | -- | -- | -0.101 | 3.16 | -- | -- | -- | -- |
| 24.46 | 0.23 | 10.6 | -0.5 | -- | -0.405 | -- | -- | -0.189 | -- | 27.74 | 1139 | -- | -- |
| 25.9 | 0.237 | 10.6 | -- | 0.295 | -0.217 | -- | -- | -0.0973 | 2.96 | 25.3 | 69 | -- | -- |
| 26.82 | 0.242 | 10.6 | -0.364 | -- | -- | -- | -- | -0.0946 | -- | -- | -- | -- | -- |
| 26.69 | 0.242 | 10.6 | -- | 0.252 | -- | -- | -- | -0.0597 | 3.16 | -- | -- | -- | -- |
| 29.71 | 0.254 | 10.6 | -- | -- | -0.177 | -- | -- | -0.0819 | -- | 32.18 | 1120 | -- | -- |
| 30.31 | 0.257 | 10.6 | -- | -- | -- | -- | -- | -0.0543 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 19.78 | temperature | 25 | 90 | < th | dose dependent | rect. | 8 | 21 |
| 2 | 19.80 | temperature | 25 | 4320 | > th | dose independent | rect. | 23 | 2 |
| 3 | 19.82 | temperature | 25 | 4320 | < th | dose independent | rect. | 22 | 5 |
| 4 | 19.83 | temperature | 25 | 4320 | < th | dose independent | rect. | 23 | 3 |
| 5 | 19.83 | temperature | 25 | 4320 | > th | dose independent | rect. | 22 | 4 |
| 8 | 19.83 | temperature | 20 | 270 | > th | dose independent | rect. | 2 | 22 |
| 16 | 19.86 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 14 |
| 26 | 19.91 | temperature | 25 | 4320 | < th | dose independent | rect. | 24 | 1 |
| 47 | 19.96 | temperature | 20 | 10 | > th | dose independent | rect. | 2 | 23 |
| 69 | 20.00 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 18 |
| 89 | 20.04 | temperature | 20 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 102 | 20.07 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 21 |
| 135 | 20.13 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 19 |
| 145 | 20.14 | temperature | 25 | 90 | < th | dose dependent | rect. | 23 | 23 |
| 159 | 20.16 | temperature | 30 | 270 | < th | dose dependent | rect. | 15 | 13 |
| 176 | 20.18 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 1 |
| 182 | 20.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 1 | 4 |
| 196 | 20.20 | temperature | 10 | 1440 | > th | dose dependent | rect. | 24 | 4 |
| 217 | 20.21 | temperature | 25 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 223 | 20.22 | temperature | 20 | 90 | > th | dose independent | rect. | 6 | 18 |
| 228 | 20.22 | temperature | 30 | 1440 | < th | dose dependent | rect. | 3 | 1 |
| 254 | 20.23 | temperature | 20 | 270 | > th | dose independent | rect. | 13 | 22 |
| 255 | 20.23 | temperature | 20 | 10 | > th | dose independent | rect. | 6 | 23 |
| 256 | 20.23 | temperature | 10 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 268 | 20.24 | temperature | 20 | 1440 | > th | dose independent | rect. | 5 | 2 |
| 272 | 20.24 | temperature | 20 | 270 | > th | dose independent | rect. | 15 | 18 |
| 283 | 20.24 | temperature | 25 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 288 | 20.25 | temperature | 20 | 90 | > th | dose dependent | sin | 10 | NA |
| 289 | 20.25 | temperature | 25 | 90 | < th | dose dependent | no | NA | NA |
| 320 | 20.27 | temperature | 20 | 1440 | < th | dose independent | rect. | 5 | 2 |
| 338 | 20.27 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 23 |
| 352 | 20.28 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 22 |
| 357 | 20.29 | temperature | 20 | 10 | > th | dose independent | rect. | 13 | 23 |
| 379 | 20.29 | temperature | 25 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 382 | 20.30 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 16 |
| 397 | 20.30 | atmosphere | 1015 | 90 | < th | dose dependent | rect. | 6 | 17 |
| 419 | 20.32 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 4 |
| 425 | 20.32 | temperature | 15 | 270 | > th | dose dependent | sin | 12 | NA |
| 433 | 20.32 | temperature | 25 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 436 | 20.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 437 | 20.32 | temperature | 25 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 439 | 20.33 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 1 |
| 450 | 20.33 | temperature | 30 | 90 | < th | dose dependent | sin | 10 | NA |
| 482 | 20.34 | wind | 1 | 14400 | < th | dose dependent | rect. | 9 | 3 |
| 496 | 20.35 | temperature | 20 | 1440 | > th | dose independent | sin | 8 | NA |
| 557 | 20.36 | temperature | 20 | 10 | < th | dose independent | rect. | 6 | 23 |
| 576 | 20.36 | temperature | 15 | 90 | > th | dose dependent | rect. | 6 | 18 |
| 597 | 20.37 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 16 |
| 604 | 20.37 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 21 |
| 624 | 20.37 | temperature | 25 | 30 | < th | dose dependent | rect. | 3 | 23 |
| 626 | 20.38 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 667 | 20.38 | humidity | 80 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 719 | 20.39 | temperature | 20 | 10 | > th | dose independent | rect. | 15 | 23 |
| 750 | 20.40 | temperature | 25 | 4320 | < th | dose independent | sin | 11 | NA |
| 786 | 20.40 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 23 |
| 836 | 20.41 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 16 |
| 847 | 20.41 | temperature | 20 | 1440 | > th | dose independent | rect. | 9 | 22 |
| 899 | 20.42 | temperature | 25 | 720 | < th | dose dependent | sin | 18 | NA |
| 942 | 20.43 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 20 |
| 968 | 20.43 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 12 |
| 992 | 20.44 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 18 |