Os04g0543500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Homeodomain-like containing protein.
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Os04g0543500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Homeodomain-like containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.65 | 0.31 | 12.5 | 0.853 | 0.471 | 0.69 | -0.0464 | 1.32 | 0.814 | 19.8 | 59.66 | 7298 | -- | -- |
| 46.66 | 0.318 | 12.6 | 0.958 | 0.46 | 0.747 | -0.102 | -- | 0.823 | 19.6 | 57.01 | 7331 | -- | -- |
| 43.65 | 0.308 | 12.5 | 0.849 | 0.472 | 0.681 | -- | 1.33 | 0.81 | 19.8 | 60.13 | 7304 | -- | -- |
| 46.43 | 0.317 | 12.6 | 1.02 | 0.49 | 0.701 | -- | -- | 0.846 | 19.6 | 61.95 | 7304 | -- | -- |
| 55.43 | 0.347 | 12.5 | 0.849 | -- | 0.703 | -- | 1.32 | 0.812 | -- | 60.35 | 7195 | -- | -- |
| 55.39 | 0.349 | 12.6 | 1.11 | 0.468 | -- | -0.0747 | -- | 0.656 | 19.8 | -- | -- | -- | -- |
| 55.41 | 0.349 | 12.6 | 1.11 | 0.468 | -- | -- | -- | 0.656 | 19.8 | -- | -- | -- | -- |
| 58.15 | 0.355 | 12.5 | 0.996 | -- | 0.761 | -- | -- | 0.855 | -- | 61.56 | 7172 | -- | -- |
| 71.64 | 0.394 | 12.6 | -- | 0.459 | 0.985 | -- | -- | 0.822 | 20.1 | 61.64 | 7200 | -- | -- |
| 67.3 | 0.383 | 12.6 | 1.11 | -- | -- | -- | -- | 0.649 | -- | -- | -- | -- | -- |
| 87.97 | 0.439 | 12.6 | -- | 0.461 | -- | -- | -- | 0.532 | 20 | -- | -- | -- | -- |
| 83.14 | 0.425 | 12.5 | -- | -- | 0.995 | -- | -- | 0.815 | -- | 61 | 7194 | -- | -- |
| 99.57 | 0.466 | 12.6 | -- | -- | -- | -- | -- | 0.527 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 42.52 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 2 | 42.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 3 | 42.57 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 4 | 42.57 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 15 | 1 |
| 5 | 42.64 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 6 | 42.64 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 5 | 12 |
| 7 | 42.65 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 5 | 12 |
| 8 | 42.65 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 5 | 12 |
| 9 | 42.70 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 8 |
| 13 | 42.71 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 5 | 12 |
| 17 | 42.73 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 18 | 42.73 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 8 |
| 32 | 42.94 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 34 | 42.99 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 9 | 8 |
| 38 | 43.04 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 44 | 43.08 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 11 | 2 |
| 50 | 43.21 | precipitation | 0.1 | 14400 | > th | dose independent | sin | 1 | NA |
| 51 | 43.21 | precipitation | 0.1 | 14400 | < th | dose independent | sin | 1 | NA |
| 52 | 43.21 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 9 | 2 |
| 53 | 43.21 | precipitation | 0.1 | 14400 | < th | dose dependent | sin | 1 | NA |
| 67 | 43.31 | humidity | 60.0 | 14400 | > th | dose dependent | rect. | 11 | 1 |
| 68 | 43.31 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 71 | 43.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 1 |
| 72 | 43.34 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 4 | 16 |
| 73 | 43.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 74 | 43.34 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 4 | 16 |
| 77 | 43.36 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 4 | 16 |
| 78 | 43.37 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 9 | 6 |
| 89 | 43.43 | humidity | 50.0 | 14400 | > th | dose dependent | rect. | 11 | 3 |
| 91 | 43.44 | humidity | 90.0 | 14400 | > th | dose dependent | rect. | 15 | 1 |
| 106 | 43.49 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 8 | 9 |
| 118 | 43.52 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 11 | 2 |
| 122 | 43.53 | wind | 1.0 | 43200 | > th | dose dependent | rect. | 5 | 1 |
| 124 | 43.54 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 7 | 6 |
| 153 | 43.58 | humidity | 60.0 | 14400 | > th | dose independent | rect. | 11 | 2 |
| 172 | 43.60 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 9 | 11 |
| 173 | 43.60 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 9 | 11 |
| 177 | 43.60 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 9 | 11 |
| 186 | 43.62 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 201 | 43.64 | humidity | 90.0 | 14400 | < th | dose dependent | rect. | 11 | 4 |
| 207 | 43.65 | wind | 9.0 | 43200 | < th | dose dependent | rect. | 5 | 1 |
| 213 | 43.66 | humidity | 70.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 239 | 43.71 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 11 | 9 |
| 240 | 43.71 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 11 | 9 |
| 249 | 43.71 | humidity | 70.0 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 254 | 43.71 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 11 | 9 |
| 261 | 43.72 | humidity | 70.0 | 14400 | > th | dose independent | rect. | 17 | 20 |
| 269 | 43.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 9 | 8 |
| 401 | 43.87 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 5 |
| 419 | 43.89 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 4 |
| 424 | 43.89 | precipitation | 0.1 | 14400 | > th | dose dependent | sin | 3 | NA |
| 461 | 43.93 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 13 | 2 |
| 479 | 43.95 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 19 | 20 |
| 490 | 43.97 | humidity | 70.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 558 | 44.02 | humidity | 90.0 | 14400 | < th | dose dependent | sin | 0 | NA |
| 584 | 44.04 | humidity | 50.0 | 14400 | > th | dose dependent | sin | 23 | NA |
| 675 | 44.11 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 19 | 19 |
| 697 | 44.12 | humidity | 70.0 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 721 | 44.13 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 19 | 20 |
| 833 | 44.17 | humidity | 80.0 | 14400 | > th | dose independent | sin | 23 | NA |
| 895 | 44.19 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 13 | 4 |
| 937 | 44.21 | humidity | 80.0 | 14400 | < th | dose dependent | no | NA | NA |
| 947 | 44.21 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 10 | 23 |
| 979 | 44.22 | humidity | 80.0 | 14400 | < th | dose dependent | rect. | 14 | 23 |