Os04g0543100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Non-protein coding transcript, unclassifiable transcript.
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Os04g0543100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Non-protein coding transcript, unclassifiable transcript.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 321.44 | 0.842 | 5.13 | -1.89 | 1.52 | 1.42 | -1.31 | 2.36 | -1.09 | 21.6 | 25.06 | 1411 | -- | -- |
| 323.59 | 0.838 | 5.21 | -2.54 | 1.5 | 1.63 | -1.32 | -- | -1.21 | 21.6 | 25.3 | 1399 | -- | -- |
| 327.7 | 0.843 | 5.13 | -1.83 | 1.52 | 1.39 | -- | 2.35 | -1.08 | 21.8 | 25.07 | 1441 | -- | -- |
| 329.36 | 0.845 | 5.21 | -2.51 | 1.52 | 1.61 | -- | -- | -1.22 | 21.8 | 25.35 | 1443 | -- | -- |
| 408.1 | 0.941 | 5.12 | -1.85 | -- | 2.44 | -- | 2.39 | -1.14 | -- | 23.79 | 891 | -- | -- |
| 438.78 | 0.982 | 5.17 | -1.96 | 1.59 | -- | -1.04 | -- | -1.05 | 22 | -- | -- | -- | -- |
| 442.95 | 0.986 | 5.17 | -1.92 | 1.59 | -- | -- | -- | -1.05 | 22.1 | -- | -- | -- | -- |
| 402.86 | 0.935 | 5.21 | -2.59 | -- | 2.59 | -- | -- | -1.41 | -- | 23.5 | 881 | -- | -- |
| 476.99 | 1.02 | 5.09 | -- | 1.52 | 1.24 | -- | -- | -0.678 | 21.9 | 28.67 | 1528 | -- | -- |
| 595.7 | 1.14 | 5.13 | -1.9 | -- | -- | -- | -- | -1.05 | -- | -- | -- | -- | -- |
| 540.55 | 1.09 | 5.12 | -- | 1.58 | -- | -- | -- | -0.836 | 22 | -- | -- | -- | -- |
| 566.9 | 1.11 | 5.11 | -- | -- | 2.03 | -- | -- | -0.992 | -- | 24.4 | 862 | -- | -- |
| 691.19 | 1.23 | 5.08 | -- | -- | -- | -- | -- | -0.837 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 300.59 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 20 | 11 |
| 9 | 309.21 | wind | 9.0 | 43200 | > th | dose independent | rect. | 20 | 12 |
| 13 | 310.37 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 15 |
| 19 | 312.79 | wind | 9.0 | 43200 | < th | dose independent | rect. | 20 | 12 |
| 22 | 313.07 | wind | 7.0 | 43200 | > th | dose independent | rect. | 6 | 1 |
| 23 | 313.60 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 42 | 315.53 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 43 | 315.55 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 50 | 316.48 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 52 | 317.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 53 | 317.10 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 18 | 1 |
| 56 | 317.36 | temperature | 30.0 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 61 | 317.97 | wind | 7.0 | 43200 | < th | dose independent | rect. | 6 | 1 |
| 62 | 318.04 | wind | 9.0 | 43200 | > th | dose independent | rect. | 19 | 6 |
| 63 | 318.14 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 65 | 318.48 | temperature | 25.0 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 79 | 319.59 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 8 | 1 |
| 90 | 320.44 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 16 | 22 |
| 107 | 321.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 14 |
| 120 | 321.19 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 22 |
| 145 | 321.35 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 173 | 321.48 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 195 | 321.54 | temperature | 25.0 | 1440 | > th | dose dependent | sin | 5 | NA |
| 210 | 321.57 | temperature | 25.0 | 1440 | > th | dose dependent | no | NA | NA |
| 247 | 321.93 | wind | 9.0 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 251 | 322.02 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 2 | 12 |
| 256 | 322.05 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 7 | 7 |
| 259 | 322.06 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 23 | 15 |
| 296 | 322.35 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 2 | 8 |
| 405 | 323.18 | wind | 9.0 | 43200 | > th | dose dependent | sin | 12 | NA |
| 470 | 323.93 | temperature | 10.0 | 1440 | > th | dose dependent | rect. | 8 | 13 |
| 486 | 324.11 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 535 | 324.50 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 572 | 324.92 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 11 | 3 |
| 600 | 325.14 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 18 |
| 627 | 325.39 | atmosphere | 995.0 | 43200 | < th | dose dependent | rect. | 14 | 1 |
| 648 | 325.56 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 654 | 325.56 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 10 | 7 |
| 669 | 325.64 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 702 | 325.88 | atmosphere | 995.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 706 | 325.90 | temperature | 10.0 | 1440 | > th | dose dependent | sin | 22 | NA |
| 750 | 326.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 8 |
| 751 | 326.13 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 3 | 11 |
| 771 | 326.18 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 772 | 326.19 | wind | 9.0 | 43200 | < th | dose independent | rect. | 18 | 17 |
| 780 | 326.23 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 18 |
| 788 | 326.26 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 22 | 16 |
| 803 | 326.34 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 15 |
| 809 | 326.37 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 4 | 13 |
| 811 | 326.37 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 9 | 2 |
| 817 | 326.39 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 10 | 7 |
| 818 | 326.39 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 20 | 21 |
| 820 | 326.40 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 855 | 326.57 | radiation | 10.0 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 864 | 326.61 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 17 | 8 |
| 891 | 326.74 | temperature | 30.0 | 1440 | < th | dose independent | sin | 1 | NA |
| 961 | 326.90 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 16 | 1 |