Os04g0543000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Protein kinase.
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Os04g0543000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Protein kinase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 140.94 | 0.558 | 3.87 | 0.218 | 0.383 | 0.794 | -0.63 | 0.822 | -0.123 | 9.89 | 26.41 | 5378 | -- | -- |
| 141.35 | 0.554 | 3.84 | 0.43 | 0.392 | 0.844 | -0.623 | -- | -0.0659 | 9.81 | 26.49 | 5448 | -- | -- |
| 142.44 | 0.556 | 3.87 | 0.213 | 0.396 | 0.789 | -- | 0.777 | -0.119 | 9.78 | 26.4 | 5459 | -- | -- |
| 142.71 | 0.556 | 3.84 | 0.416 | 0.399 | 0.836 | -- | -- | -0.0571 | 9.82 | 26.47 | 5464 | -- | -- |
| 150.94 | 0.572 | 3.88 | 0.248 | -- | 0.861 | -- | 0.713 | -0.1 | -- | 26.31 | 5264 | -- | -- |
| 160.82 | 0.595 | 3.88 | 0.106 | 0.449 | -- | -0.518 | -- | -0.21 | 10.2 | -- | -- | -- | -- |
| 161.89 | 0.596 | 3.88 | 0.0859 | 0.451 | -- | -- | -- | -0.211 | 10.3 | -- | -- | -- | -- |
| 151.2 | 0.573 | 3.85 | 0.445 | -- | 0.911 | -- | -- | -0.045 | -- | 26.3 | 5263 | -- | -- |
| 146.67 | 0.564 | 3.86 | -- | 0.401 | 0.705 | -- | -- | -0.123 | 9.86 | 26.5 | 5415 | -- | -- |
| 174.27 | 0.617 | 3.89 | 0.0791 | -- | -- | -- | -- | -0.212 | -- | -- | -- | -- | -- |
| 162.08 | 0.596 | 3.88 | -- | 0.451 | -- | -- | -- | -0.221 | 10.2 | -- | -- | -- | -- |
| 155.58 | 0.581 | 3.87 | -- | -- | 0.765 | -- | -- | -0.126 | -- | 26.47 | 5259 | -- | -- |
| 174.43 | 0.616 | 3.89 | -- | -- | -- | -- | -- | -0.221 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 139.41 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 3 | 139.60 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 20 | 2 |
| 10 | 139.74 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 17 | 7 |
| 23 | 139.95 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 6 |
| 50 | 140.51 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 15 | 2 |
| 56 | 140.64 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 1 |
| 87 | 141.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 88 | 141.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 20 | 1 |
| 90 | 141.14 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 91 | 141.15 | wind | 9.0 | 14400 | > th | dose independent | rect. | 15 | 2 |
| 98 | 141.30 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 99 | 141.30 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 103 | 141.33 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 16 |
| 105 | 141.34 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 107 | 141.36 | wind | 3.0 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 121 | 141.44 | temperature | 25.0 | 14400 | < th | dose independent | sin | 14 | NA |
| 129 | 141.48 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 154 | 141.57 | radiation | 30.0 | 4320 | < th | dose independent | rect. | 15 | 13 |
| 156 | 141.57 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 20 | 1 |
| 161 | 141.58 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 20 | 1 |
| 176 | 141.62 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 178 | 141.62 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 192 | 141.67 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 193 | 141.67 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 17 | 1 |
| 259 | 141.82 | temperature | 25.0 | 14400 | > th | dose independent | sin | 14 | NA |
| 264 | 141.82 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 18 | 8 |
| 270 | 141.83 | temperature | 30.0 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 285 | 141.86 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 17 | 15 |
| 296 | 141.86 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 16 |
| 367 | 141.95 | temperature | 20.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 389 | 141.98 | temperature | 10.0 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 397 | 141.99 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 1 |
| 408 | 142.00 | temperature | 25.0 | 4320 | > th | dose dependent | rect. | 12 | 1 |
| 439 | 142.03 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 14 | 4 |
| 447 | 142.04 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 455 | 142.05 | wind | 9.0 | 14400 | < th | dose independent | rect. | 15 | 2 |
| 457 | 142.05 | temperature | 25.0 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 465 | 142.06 | temperature | 25.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 468 | 142.06 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 471 | 142.06 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 20 | 4 |
| 482 | 142.07 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 14 |
| 484 | 142.07 | radiation | 20.0 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 516 | 142.10 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 15 | 3 |
| 529 | 142.11 | radiation | 30.0 | 4320 | > th | dose independent | rect. | 15 | 2 |
| 546 | 142.11 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 23 | 3 |
| 552 | 142.12 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 15 | 3 |
| 553 | 142.12 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 15 | 3 |
| 575 | 142.14 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 23 | 1 |
| 587 | 142.15 | temperature | 20.0 | 14400 | > th | dose dependent | rect. | 3 | 1 |
| 598 | 142.16 | temperature | 25.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 608 | 142.17 | temperature | 10.0 | 14400 | > th | dose dependent | sin | 13 | NA |
| 666 | 142.22 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 687 | 142.23 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 715 | 142.26 | radiation | 10.0 | 4320 | < th | dose independent | rect. | 16 | 4 |
| 719 | 142.26 | temperature | 30.0 | 14400 | < th | dose dependent | sin | 13 | NA |
| 737 | 142.27 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 14 | 20 |
| 761 | 142.29 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 770 | 142.30 | radiation | 40.0 | 14400 | < th | dose independent | rect. | 12 | 1 |
| 771 | 142.30 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 14 | 2 |
| 800 | 142.32 | temperature | 10.0 | 14400 | > th | dose dependent | rect. | 1 | 1 |
| 880 | 142.39 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 966 | 142.44 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 10 | 8 |