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Os04g0542200

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Iron-phytosiderophore transporter protein yellow stripe 1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.4 (0.0256) R2 : 0.666
β1 : -1.53 (0.0935) R2dD : 0.208 R2D : 0.143
β2 : 1.82 (0.0794) R2dC : 0.559 R2C : 0.0831
β3 : -1.78 (0.0991) R2dE : 0.338 R2E : -0.182
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.529 (0.0545) R2dN8 : 0.0928 R2N8 : 0.0232
σ : 0.478
deviance : 105.15
__
_____
C
peak time of C : 17.1
E
wheather : radiation
threshold : 10.43
memory length : 17
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 15
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
100.45 0.471 10.4 -1.53 1.88 -1.83 -1.67 1.29 -0.506 17.1 10.21 12 14.9 --
102.85 0.472 10.4 -1.55 1.83 -1.73 -1.34 -- -0.5 16.9 10.52 12 15.1 --
105.06 0.477 10.4 -1.53 1.82 -1.78 -- 0.24 -0.529 17.1 10.43 17 15 --
105.15 0.478 10.4 -1.53 1.82 -1.78 -- -- -0.529 17.1 10.43 17 15 --
161.41 0.592 10.4 -1.89 -- -2.07 -- -1.1 -0.597 -- 1.144 314 19.3 --
152.49 0.579 10.4 -1.53 1.19 -- -1 -- -0.497 15 -- -- -- --
155.82 0.585 10.4 -1.55 1.19 -- -- -- -0.503 15 -- -- -- --
159 0.587 10.4 -1.79 -- -1.91 -- -- -0.58 -- 2.253 280 19.4 --
167.68 0.603 10.4 -- 1.84 -1.83 -- -- -0.385 17 10 22 15.3 --
236.91 0.719 10.4 -1.6 -- -- -- -- -0.534 -- -- -- -- --
219.41 0.693 10.3 -- 1.22 -- -- -- -0.33 15 -- -- -- --
221.35 0.693 10.3 -- -- -1.57 -- -- -0.343 -- 9.389 756 11.6 --
304.77 0.815 10.3 -- -- -- -- -- -0.356 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.20 wind 9.0 270 < th dose independent rect. 3 16
2 90.75 wind 9.0 270 < th dose independent rect. 15 16
3 91.09 wind 9.0 270 < th dose independent rect. 15 4
4 91.19 precipitation 0.1 270 < th dose independent rect. 3 16
5 91.19 precipitation 0.1 270 < th dose dependent rect. 3 16
6 91.22 precipitation 0.1 270 < th dose independent rect. 19 8
7 91.22 precipitation 0.1 270 < th dose dependent rect. 19 8
8 91.23 radiation 1.0 270 < th dose dependent rect. 19 8
9 91.24 temperature 10.0 270 > th dose independent rect. 19 8
10 91.24 temperature 30.0 270 < th dose independent rect. 19 8
11 91.24 humidity 50.0 270 > th dose independent rect. 19 8
12 91.24 atmosphere 995.0 270 > th dose independent rect. 19 8
13 91.24 radiation 1.0 270 < th dose independent rect. 19 8
18 91.24 temperature 10.0 270 > th dose independent rect. 3 16
19 91.24 atmosphere 1015.0 270 < th dose independent rect. 3 16
25 91.37 precipitation 0.1 270 < th dose independent rect. 7 8
26 91.37 precipitation 0.1 270 < th dose dependent rect. 7 8
27 91.57 temperature 10.0 270 > th dose independent rect. 15 4
29 91.57 atmosphere 1010.0 270 < th dose independent rect. 15 4
31 91.57 temperature 10.0 270 > th dose independent rect. 19 20
32 91.61 temperature 10.0 270 > th dose independent rect. 7 8
33 91.61 atmosphere 1015.0 270 < th dose independent rect. 7 8
34 91.61 temperature 10.0 270 > th dose independent rect. 15 16
35 91.64 wind 9.0 270 < th dose independent rect. 19 8
36 91.79 precipitation 0.1 270 < th dose independent rect. 15 4
37 91.79 precipitation 0.1 270 < th dose dependent rect. 15 4
38 91.80 wind 1.0 270 > th dose independent rect. 7 8
39 91.87 radiation 1.0 270 > th dose independent rect. 7 8
40 91.91 radiation 40.0 270 < th dose independent rect. 14 5
41 91.98 wind 1.0 270 > th dose independent rect. 15 4
42 92.01 radiation 40.0 270 < th dose independent rect. 15 16
45 92.26 precipitation 0.1 270 < th dose independent rect. 19 20
46 92.26 precipitation 0.1 270 < th dose dependent rect. 19 20
47 92.27 wind 9.0 270 < th dose independent rect. 14 6
48 92.27 precipitation 0.1 270 < th dose independent rect. 15 16
49 92.27 precipitation 0.1 270 < th dose dependent rect. 15 16
50 92.38 temperature 15.0 270 > th dose independent rect. 20 18
51 92.44 atmosphere 995.0 270 > th dose independent rect. 19 20
53 92.60 atmosphere 995.0 270 > th dose independent rect. 15 4
56 92.72 atmosphere 995.0 270 > th dose independent rect. 7 8
58 92.91 temperature 10.0 270 > th dose independent rect. 14 6
59 92.91 atmosphere 1015.0 270 < th dose independent rect. 14 6
61 92.91 atmosphere 995.0 270 > th dose independent rect. 20 18
63 93.23 wind 1.0 270 > th dose independent rect. 14 6
64 93.24 precipitation 0.1 270 < th dose independent rect. 14 6
65 93.24 wind 9.0 270 < th dose independent rect. 7 8
66 93.24 precipitation 0.1 270 < th dose dependent rect. 14 6
72 93.26 atmosphere 995.0 270 > th dose independent rect. 15 16
73 93.28 precipitation 0.1 270 < th dose independent rect. 20 18
74 93.28 precipitation 0.1 270 < th dose dependent rect. 20 18
75 93.34 wind 9.0 270 < th dose independent rect. 19 20
86 93.64 radiation 40.0 90 < th dose dependent rect. 16 17
92 93.82 atmosphere 995.0 270 > th dose independent rect. 14 6
93 93.84 atmosphere 995.0 270 > th dose independent rect. 3 16
94 93.85 humidity 50.0 270 > th dose independent rect. 19 20
100 94.25 humidity 50.0 270 > th dose independent rect. 20 18
101 94.27 wind 9.0 270 < th dose independent rect. 20 18
104 94.35 humidity 50.0 270 > th dose independent rect. 7 8
109 94.61 atmosphere 1015.0 270 < th dose independent rect. 19 20
116 95.07 atmosphere 1015.0 270 < th dose independent rect. 20 18
121 95.27 radiation 30.0 90 < th dose dependent rect. 15 5
137 95.81 radiation 20.0 90 < th dose independent rect. 16 17
139 95.95 wind 9.0 270 < th dose dependent rect. 15 4
158 96.04 wind 1.0 270 > th dose independent rect. 19 20
176 96.75 wind 1.0 270 > th dose independent rect. 20 18
179 96.79 wind 1.0 270 > th dose independent rect. 19 8
236 97.43 atmosphere 1015.0 270 < th dose independent rect. 19 8
241 97.61 radiation 20.0 90 < th dose dependent rect. 5 15
244 97.67 temperature 10.0 270 > th dose dependent rect. 15 4
267 98.12 radiation 10.0 10 < th dose dependent rect. 14 6
279 98.33 radiation 40.0 90 < th dose independent rect. 17 16
293 98.61 atmosphere 995.0 90 > th dose independent rect. 17 16
297 98.62 temperature 15.0 30 > th dose independent rect. 20 21
331 98.85 temperature 10.0 90 > th dose independent rect. 17 16
335 98.90 wind 9.0 90 < th dose independent rect. 17 16
343 99.00 radiation 10.0 10 < th dose dependent rect. 10 10
350 99.10 temperature 10.0 270 > th dose dependent rect. 1 8
428 99.84 precipitation 0.1 270 < th dose independent rect. 1 8
429 99.84 precipitation 0.1 270 < th dose dependent rect. 1 8
441 100.07 wind 7.0 270 < th dose independent rect. 1 8
452 100.18 precipitation 0.1 90 < th dose independent rect. 17 16
453 100.18 precipitation 0.1 90 < th dose dependent rect. 17 16
455 100.20 humidity 50.0 10 > th dose independent rect. 17 3
463 100.28 radiation 10.0 10 < th dose dependent rect. 8 12
483 100.51 temperature 10.0 270 > th dose independent rect. 1 8
485 100.51 humidity 50.0 270 > th dose independent rect. 1 8
486 100.51 atmosphere 995.0 270 > th dose independent rect. 1 8
487 100.51 atmosphere 1015.0 270 < th dose independent rect. 1 8
488 100.51 temperature 10.0 270 > th dose independent rect. 9 16
492 100.52 atmosphere 1015.0 270 < th dose dependent rect. 15 4
510 100.63 precipitation 0.1 270 < th dose independent rect. 9 16
511 100.63 precipitation 0.1 270 < th dose dependent rect. 9 16
541 101.01 wind 9.0 270 < th dose dependent rect. 1 8
570 101.17 radiation 40.0 270 < th dose independent rect. 1 8
574 101.20 humidity 50.0 90 > th dose independent rect. 17 16
583 101.24 humidity 50.0 270 > th dose dependent rect. 1 8
591 101.30 radiation 10.0 10 < th dose dependent sin 21 NA
609 101.50 wind 9.0 270 < th dose dependent rect. 2 17
610 101.53 temperature 10.0 270 > th dose dependent rect. 14 6
629 101.70 temperature 30.0 270 < th dose independent rect. 1 8
677 102.01 humidity 50.0 10 > th dose independent rect. 17 16
690 102.09 atmosphere 995.0 270 > th dose dependent rect. 15 3
735 102.26 humidity 50.0 270 > th dose independent rect. 9 16
856 102.99 temperature 10.0 270 > th dose dependent rect. 19 7
859 103.00 radiation 1.0 270 > th dose independent rect. 15 15
922 103.37 humidity 90.0 270 < th dose independent rect. 15 4
954 103.57 atmosphere 995.0 30 > th dose dependent rect. 17 3
961 103.61 wind 9.0 90 < th dose dependent rect. 16 17
973 103.67 wind 9.0 270 < th dose independent rect. 9 16
974 103.67 radiation 40.0 90 < th dose dependent rect. 15 20
983 103.73 radiation 10.0 90 < th dose independent rect. 5 15