Os04g0540900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0540900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 189.52 | 0.647 | 5.22 | 0.748 | 0.765 | -1.99 | -1.69 | -1.64 | 0.0777 | 4.01 | 23.41 | 800 | -- | -- |
| 192.99 | 0.647 | 5.25 | 0.545 | 0.764 | -1.7 | -1.65 | -- | 0.0371 | 4.09 | 23.7 | 808 | -- | -- |
| 197.24 | 0.654 | 5.21 | 0.762 | 0.762 | -2.02 | -- | -1.53 | 0.105 | 3.88 | 22.87 | 779 | -- | -- |
| 200.16 | 0.659 | 5.25 | 0.545 | 0.751 | -1.74 | -- | -- | 0.0471 | 3.82 | 23.5 | 824 | -- | -- |
| 226.65 | 0.701 | 5.21 | 0.767 | -- | -2.25 | -- | -1.78 | 0.125 | -- | 22.84 | 906 | -- | -- |
| 234.17 | 0.717 | 5.19 | 0.984 | 0.837 | -- | -1.49 | -- | 0.34 | 3.29 | -- | -- | -- | -- |
| 241 | 0.727 | 5.19 | 1.01 | 0.827 | -- | -- | -- | 0.349 | 2.94 | -- | -- | -- | -- |
| 228.92 | 0.705 | 5.26 | 0.507 | -- | -1.89 | -- | -- | 0.0139 | -- | 23.86 | 949 | -- | -- |
| 206.8 | 0.67 | 5.27 | -- | 0.721 | -2 | -- | -- | -0.0532 | 4.04 | 23.62 | 894 | -- | -- |
| 280.31 | 0.782 | 5.18 | 1.05 | -- | -- | -- | -- | 0.37 | -- | -- | -- | -- | -- |
| 268.05 | 0.766 | 5.21 | -- | 0.847 | -- | -- | -- | 0.236 | 2.95 | -- | -- | -- | -- |
| 234.79 | 0.714 | 5.28 | -- | -- | -2.13 | -- | -- | -0.0771 | -- | 23.8 | 959 | -- | -- |
| 309.3 | 0.821 | 5.21 | -- | -- | -- | -- | -- | 0.254 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 178.53 | temperature | 25 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 2 | 179.77 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 3 |
| 6 | 181.40 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 3 |
| 8 | 181.57 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 1 |
| 26 | 183.64 | temperature | 20 | 720 | < th | dose independent | sin | 8 | NA |
| 29 | 183.73 | temperature | 20 | 720 | < th | dose independent | rect. | 23 | 8 |
| 35 | 183.95 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 11 |
| 70 | 185.10 | temperature | 20 | 720 | < th | dose independent | rect. | 21 | 16 |
| 77 | 185.23 | temperature | 25 | 720 | < th | dose dependent | sin | 7 | NA |
| 168 | 186.96 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 21 |
| 208 | 187.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 8 |
| 227 | 187.92 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 21 |
| 240 | 188.08 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 8 |
| 246 | 188.18 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 10 |
| 256 | 188.31 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 12 |
| 257 | 188.31 | temperature | 20 | 720 | > th | dose independent | rect. | 12 | 23 |
| 262 | 188.40 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 18 |
| 308 | 188.82 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 21 |
| 310 | 188.85 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 23 |
| 315 | 188.91 | temperature | 20 | 720 | > th | dose independent | rect. | 23 | 16 |
| 318 | 188.96 | temperature | 20 | 720 | < th | dose independent | rect. | 24 | 23 |
| 319 | 188.97 | temperature | 20 | 720 | > th | dose independent | sin | 7 | NA |
| 341 | 189.11 | temperature | 20 | 720 | > th | dose independent | rect. | 21 | 14 |
| 344 | 189.12 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 17 |
| 415 | 189.69 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 23 |
| 427 | 189.77 | temperature | 20 | 720 | > th | dose independent | no | NA | NA |
| 436 | 189.90 | temperature | 20 | 720 | < th | dose independent | no | NA | NA |
| 473 | 190.19 | temperature | 20 | 720 | > th | dose independent | rect. | 1 | 14 |
| 515 | 190.59 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 23 |
| 544 | 190.95 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 14 |
| 600 | 191.58 | temperature | 20 | 720 | > th | dose independent | rect. | 5 | 23 |
| 709 | 192.68 | temperature | 10 | 720 | > th | dose dependent | sin | 8 | NA |
| 815 | 193.66 | temperature | 20 | 720 | > th | dose independent | rect. | 3 | 1 |
| 880 | 194.34 | temperature | 20 | 720 | > th | dose independent | rect. | 16 | 19 |