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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0540600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Aldehyde dehydrogenase NAD(P)-dependent family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.56 (0.044) R2 : 0.4
β1 : -1.45 (0.166) R2dD : 0.11 R2D : 0.142
β2 : -- (--) R2dC : -- R2C : --
β3 : 3.6 (0.301) R2dE : 0.201 R2E : 0.261
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.513 (0.0942) R2dN8 : 0.0541 R2N8 : 0.0204
σ : 0.824
deviance : 312.7
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_____
C
peak time of C : --
E
wheather : radiation
threshold : 58.56
memory length : 604
response mode : > th
dose dependency : dose dependent
G
type of G : rect.
peak or start time of G : 11.2
open length of G : 0.783

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose dependent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
309.79 0.827 3.55 -1.82 0.538 1.04 -0.933 -5.13 -0.674 7.96 53.16 698 11 1.03
307.43 0.817 3.49 -1.52 0.279 2.89 -0.991 -- -0.453 9.84 58.44 607 11.2 0.801
295.48 0.801 3.56 -1.64 0.449 1.7 -- -5.89 -0.668 7.74 57.23 613 11 1.39
303.33 0.811 3.55 -1.39 0.422 3.65 -- -- -0.539 7.92 58.24 616 11.2 0.77
304.88 0.813 3.55 -1.6 -- 2.01 -- -5.4 -0.552 -- 57.96 593 11 1.42
388.33 0.924 3.57 -1.84 0.368 -- -1.84 -- -0.583 12.4 -- -- -- --
400.81 0.938 3.57 -1.91 0.42 -- -- -- -0.596 10.5 -- -- -- --
312.7 0.824 3.56 -1.45 -- 3.6 -- -- -0.513 -- 58.56 604 11.2 0.783
346.03 0.866 3.55 -- 0.435 4.41 -- -- -0.462 6.94 58.7 621 11.2 0.499
411.62 0.948 3.58 -1.92 -- -- -- -- -0.598 -- -- -- -- --
497.23 1.04 3.53 -- 0.434 -- -- -- -0.383 10.8 -- -- -- --
357.6 0.881 3.54 -- -- 4.35 -- -- -0.418 -- 59.04 624 11.2 0.498
508.88 1.05 3.54 -- -- -- -- -- -0.385 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 327.28 radiation 40 4320 < th dose independent rect. 15 17
2 329.25 humidity 90 43200 > th dose dependent rect. 13 1
4 331.12 wind 7 43200 < th dose independent rect. 10 2
5 331.56 wind 7 43200 > th dose independent rect. 10 2
8 332.32 radiation 10 720 > th dose dependent rect. 11 1
9 332.34 wind 7 43200 > th dose independent rect. 9 4
10 332.34 radiation 20 4320 > th dose dependent rect. 16 16
11 332.36 wind 7 43200 > th dose dependent rect. 10 3
18 333.23 atmosphere 1010 14400 < th dose independent rect. 11 1
20 333.31 humidity 60 43200 < th dose independent rect. 19 10
23 333.34 temperature 15 43200 < th dose dependent rect. 20 4
24 333.35 temperature 15 43200 < th dose dependent rect. 21 2
25 333.41 atmosphere 1010 14400 > th dose independent rect. 11 1
32 333.68 humidity 60 43200 < th dose dependent rect. 19 12
35 333.76 temperature 15 43200 < th dose dependent rect. 16 11
52 333.88 temperature 15 43200 < th dose dependent sin 16 NA
64 333.92 temperature 15 43200 < th dose dependent rect. 9 18
65 333.92 temperature 15 43200 < th dose dependent rect. 8 20
99 334.11 temperature 15 43200 < th dose independent rect. 11 2
116 334.19 temperature 15 43200 < th dose dependent rect. 15 19
118 334.19 temperature 15 43200 < th dose dependent rect. 1 23
141 334.24 humidity 90 43200 > th dose dependent rect. 12 3
152 334.25 temperature 15 43200 < th dose dependent no NA NA
156 334.25 temperature 15 43200 < th dose dependent rect. 19 23
236 334.36 radiation 40 720 > th dose dependent rect. 11 1
273 334.47 temperature 15 43200 > th dose independent rect. 12 1
300 334.56 temperature 15 43200 < th dose independent rect. 7 6
308 334.60 humidity 60 43200 > th dose independent rect. 19 10
317 334.63 wind 9 43200 < th dose dependent rect. 10 2
336 334.69 temperature 15 43200 < th dose dependent sin 5 NA
377 334.87 temperature 15 43200 < th dose independent rect. 8 9
382 334.88 temperature 15 43200 < th dose dependent rect. 10 1
384 334.89 temperature 15 43200 > th dose independent rect. 7 6
400 334.93 humidity 80 43200 > th dose dependent rect. 10 4
417 334.98 humidity 90 43200 > th dose independent rect. 16 1
422 335.01 wind 7 43200 > th dose dependent rect. 9 6
425 335.02 humidity 80 43200 < th dose independent rect. 16 1
431 335.03 temperature 15 43200 < th dose independent rect. 8 2
454 335.09 humidity 90 43200 > th dose independent rect. 19 1
471 335.15 temperature 15 43200 > th dose independent rect. 8 9
474 335.16 temperature 20 1440 > th dose independent rect. 22 1
524 335.31 temperature 15 43200 < th dose dependent rect. 1 2
544 335.36 wind 7 43200 > th dose independent rect. 5 9
557 335.42 humidity 90 43200 < th dose independent rect. 16 4
578 335.49 temperature 15 43200 < th dose independent rect. 7 18
583 335.51 temperature 15 43200 > th dose independent rect. 22 1
597 335.56 temperature 20 1440 < th dose independent rect. 22 1
613 335.61 wind 3 43200 < th dose independent rect. 8 4
633 335.64 radiation 1 14400 < th dose dependent rect. 6 1
636 335.64 humidity 80 43200 > th dose dependent rect. 10 7
638 335.65 temperature 15 43200 < th dose independent rect. 22 2
654 335.68 temperature 15 43200 > th dose independent rect. 7 17
669 335.73 temperature 15 43200 < th dose independent sin 21 NA
735 335.83 temperature 15 43200 < th dose independent rect. 15 10
749 335.84 radiation 1 14400 < th dose dependent rect. 3 4
750 335.85 temperature 15 43200 > th dose independent rect. 15 1
757 335.85 humidity 60 43200 < th dose dependent rect. 19 14
759 335.86 temperature 15 43200 < th dose independent rect. 15 1
767 335.87 radiation 1 14400 < th dose dependent rect. 20 11
768 335.88 wind 9 43200 < th dose independent rect. 24 2
790 335.90 radiation 1 14400 < th dose dependent rect. 23 8
813 335.95 temperature 15 43200 > th dose independent sin 20 NA
830 335.97 temperature 15 43200 > th dose independent rect. 15 10
859 336.02 humidity 90 43200 < th dose independent rect. 10 1
904 336.09 atmosphere 1005 14400 > th dose dependent rect. 19 1
920 336.11 temperature 15 43200 < th dose dependent rect. 17 1
952 336.16 humidity 90 43200 < th dose independent rect. 18 2
983 336.20 radiation 20 4320 < th dose independent rect. 15 18
999 336.22 humidity 70 43200 < th dose independent rect. 21 7