Os04g0540500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Hypothetical protein.
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Os04g0540500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 85.82 | 0.435 | 9.62 | -0.552 | 0.466 | -1.52 | 0.93 | -1.39 | 0.282 | 23 | 22.89 | 6 | -- | -- |
| 87.76 | 0.44 | 9.64 | -0.707 | 0.448 | -1.31 | 0.59 | -- | 0.254 | 22.8 | 23.03 | 5 | -- | -- |
| 88.5 | 0.442 | 9.63 | -0.662 | 0.455 | -1.44 | -- | -0.688 | 0.265 | 22.9 | 22.89 | 6 | -- | -- |
| 89.2 | 0.443 | 9.64 | -0.731 | 0.444 | -1.34 | -- | -- | 0.254 | 22.8 | 22.89 | 5 | -- | -- |
| 99.96 | 0.468 | 9.61 | -0.621 | -- | -1.27 | -- | -0.606 | 0.312 | -- | 22 | 18 | -- | -- |
| 109.11 | 0.49 | 9.6 | -0.44 | 0.292 | -- | 0.664 | -- | 0.425 | 21.7 | -- | -- | -- | -- |
| 110.76 | 0.493 | 9.6 | -0.465 | 0.29 | -- | -- | -- | 0.425 | 21.5 | -- | -- | -- | -- |
| 100.32 | 0.469 | 9.62 | -0.667 | -- | -1.11 | -- | -- | 0.297 | -- | 22.5 | 6 | -- | -- |
| 102.09 | 0.473 | 9.61 | -- | 0.401 | -1.07 | -- | -- | 0.37 | 22.5 | 22.68 | 2 | -- | -- |
| 115.72 | 0.503 | 9.59 | -0.463 | -- | -- | -- | -- | 0.424 | -- | -- | -- | -- | -- |
| 116.46 | 0.505 | 9.59 | -- | 0.29 | -- | -- | -- | 0.476 | 21.4 | -- | -- | -- | -- |
| 111.27 | 0.493 | 9.6 | -- | -- | -0.868 | -- | -- | 0.394 | -- | 22.5 | 2 | -- | -- |
| 121.37 | 0.514 | 9.58 | -- | -- | -- | -- | -- | 0.475 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.63 | temperature | 25 | 10 | < th | dose dependent | rect. | 15 | 15 |
| 13 | 82.40 | temperature | 25 | 10 | < th | dose dependent | rect. | 12 | 18 |
| 32 | 83.11 | temperature | 25 | 10 | < th | dose dependent | sin | 14 | NA |
| 139 | 85.47 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 3 |
| 149 | 85.69 | temperature | 25 | 720 | < th | dose dependent | rect. | 15 | 6 |
| 156 | 85.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 310 | 87.67 | temperature | 20 | 30 | < th | dose independent | rect. | 15 | 15 |
| 441 | 88.37 | temperature | 20 | 10 | < th | dose independent | rect. | 12 | 18 |
| 491 | 88.54 | temperature | 20 | 30 | < th | dose independent | sin | 13 | NA |
| 584 | 88.89 | temperature | 10 | 10 | > th | dose dependent | sin | 12 | NA |
| 651 | 89.13 | temperature | 20 | 30 | > th | dose independent | sin | 13 | NA |
| 915 | 90.03 | temperature | 25 | 10 | < th | dose dependent | no | NA | NA |
| 921 | 90.06 | temperature | 25 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 926 | 90.08 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 23 |
| 933 | 90.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 934 | 90.10 | temperature | 25 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 952 | 90.16 | temperature | 25 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 964 | 90.20 | temperature | 25 | 10 | < th | dose dependent | rect. | 19 | 23 |