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Os04g0538800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Kinesin heavy chain (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 9.24 (0.0186) R2 : 0.000144
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0101 (0.0392) R2dN8 : 0.000186 R2N8 : 0.000144
σ : 0.351
deviance : 56.52
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
41.09 0.301 9.24 0.194 0.323 -0.431 0.176 -0.265 -0.0215 6.42 72 1239 -- --
41.25 0.299 9.24 0.16 0.32 -0.434 0.185 -- -0.0196 6.36 72 1238 -- --
41.14 0.299 9.24 0.196 0.329 -0.439 -- -0.267 -0.0221 6.67 71.65 1229 -- --
41.29 0.299 9.24 0.154 0.331 -0.456 -- -- -0.0324 6.68 71.99 1229 -- --
46.56 0.318 9.25 0.202 -- -0.443 -- -0.236 -0.0199 -- 72 1268 -- --
47.98 0.325 9.23 0.245 0.34 -- 0.483 -- 0.0322 5.03 -- -- -- --
48.46 0.326 9.23 0.246 0.349 -- -- -- 0.0301 5.51 -- -- -- --
46.68 0.318 9.25 0.162 -- -0.468 -- -- -0.0258 -- 72.34 1281 -- --
41.91 0.302 9.25 -- 0.321 -0.466 -- -- -0.0464 6.67 72 1232 -- --
54.78 0.346 9.24 0.257 -- -- -- -- 0.0386 -- -- -- -- --
50.05 0.331 9.24 -- 0.353 -- -- -- 0.00274 5.48 -- -- -- --
47.33 0.32 9.26 -- -- -0.485 -- -- -0.053 -- 71.9 1268 -- --
56.52 0.351 9.24 -- -- -- -- -- 0.0101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 40.38 radiation 1.0 90 < th dose dependent rect. 5 22
3 40.48 wind 3.0 90 < th dose dependent rect. 3 5
5 40.52 radiation 1.0 90 < th dose independent rect. 6 21
7 40.53 wind 3.0 10 < th dose dependent rect. 3 6
10 40.57 temperature 25.0 270 < th dose independent rect. 1 4
11 40.57 humidity 70.0 90 > th dose independent rect. 9 18
12 40.57 humidity 50.0 1440 < th dose dependent rect. 16 1
13 40.58 humidity 50.0 1440 < th dose independent rect. 16 1
24 40.76 wind 1.0 270 < th dose dependent rect. 4 1
30 40.81 humidity 50.0 90 > th dose dependent rect. 9 18
31 40.82 wind 7.0 270 < th dose independent rect. 6 19
34 40.84 humidity 60.0 270 > th dose dependent rect. 6 18
38 40.85 humidity 70.0 270 > th dose dependent rect. 1 4
52 40.90 wind 5.0 270 < th dose dependent rect. 1 4
55 40.92 wind 1.0 270 < th dose independent rect. 4 1
59 40.93 humidity 80.0 270 > th dose independent rect. 6 18
65 40.94 radiation 10.0 90 < th dose dependent rect. 17 10
66 40.94 humidity 50.0 10 > th dose dependent rect. 9 19
75 40.97 humidity 50.0 270 > th dose dependent rect. 6 6
81 40.99 wind 5.0 90 < th dose independent rect. 17 10
82 40.99 temperature 15.0 270 > th dose independent rect. 1 15
90 41.01 precipitation 0.1 270 < th dose independent rect. 1 5
92 41.01 precipitation 0.1 270 < th dose dependent rect. 1 5
93 41.01 wind 9.0 90 < th dose dependent rect. 17 10
97 41.02 temperature 30.0 720 > th dose dependent rect. 18 1
117 41.05 precipitation 0.1 270 < th dose independent rect. 1 15
121 41.05 precipitation 0.1 270 < th dose dependent rect. 1 15
122 41.05 wind 9.0 270 < th dose dependent rect. 6 18
127 41.07 temperature 10.0 270 > th dose dependent rect. 1 5
147 41.11 humidity 60.0 10 > th dose dependent rect. 7 21
154 41.13 humidity 60.0 90 > th dose independent rect. 17 10
159 41.15 humidity 50.0 1440 > th dose independent rect. 16 1
160 41.15 humidity 90.0 270 > th dose independent rect. 1 4
172 41.18 precipitation 0.1 270 < th dose independent rect. 16 9
173 41.18 temperature 15.0 90 > th dose independent rect. 3 14
178 41.18 precipitation 0.1 270 < th dose dependent rect. 16 9
180 41.19 temperature 30.0 10 < th dose independent rect. 18 10
186 41.20 precipitation 0.1 270 < th dose independent rect. 6 19
190 41.20 precipitation 0.1 270 < th dose dependent rect. 6 19
192 41.21 temperature 30.0 90 < th dose independent rect. 17 10
199 41.22 humidity 50.0 270 > th dose independent rect. 5 7
201 41.22 temperature 15.0 270 > th dose independent rect. 6 19
202 41.22 humidity 70.0 1440 > th dose independent rect. 17 19
208 41.24 radiation 10.0 270 < th dose independent rect. 1 5
216 41.25 humidity 70.0 1440 > th dose dependent rect. 6 7
218 41.26 humidity 70.0 1440 > th dose independent sin 11 NA
224 41.27 wind 9.0 270 < th dose independent rect. 1 5
225 41.27 temperature 10.0 270 > th dose independent rect. 1 5
228 41.27 humidity 50.0 270 > th dose independent rect. 1 5
231 41.27 atmosphere 995.0 270 > th dose independent rect. 1 5
232 41.27 atmosphere 1010.0 270 < th dose independent rect. 1 5
243 41.27 humidity 50.0 90 > th dose dependent rect. 17 10
261 41.28 wind 9.0 270 < th dose independent rect. 5 8
262 41.28 humidity 70.0 1440 > th dose independent rect. 17 17
265 41.28 radiation 10.0 270 < th dose dependent rect. 1 4
273 41.29 temperature 15.0 270 > th dose independent rect. 13 16
279 41.30 wind 3.0 270 < th dose independent rect. 1 4
303 41.32 temperature 10.0 270 > th dose independent rect. 5 8
304 41.32 atmosphere 995.0 270 > th dose independent rect. 5 8
305 41.32 atmosphere 1015.0 270 < th dose independent rect. 5 8
311 41.33 radiation 1.0 90 < th dose independent rect. 17 10
350 41.36 humidity 50.0 90 > th dose dependent rect. 3 6
363 41.38 precipitation 0.1 270 < th dose independent rect. 5 8
365 41.38 precipitation 0.1 270 < th dose dependent rect. 5 8
376 41.40 atmosphere 995.0 270 > th dose independent rect. 1 15
390 41.41 radiation 20.0 270 < th dose independent rect. 16 9
391 41.41 temperature 15.0 270 > th dose independent rect. 7 17
395 41.41 wind 9.0 270 < th dose dependent rect. 6 7
432 41.44 atmosphere 1010.0 270 < th dose independent rect. 12 18
444 41.45 temperature 10.0 270 > th dose independent rect. 16 9
447 41.45 atmosphere 1015.0 270 < th dose independent rect. 1 15
465 41.48 wind 7.0 90 < th dose independent rect. 9 18
467 41.48 humidity 70.0 1440 < th dose independent rect. 15 21
492 41.50 temperature 10.0 43200 > th dose independent rect. 10 5
495 41.50 humidity 70.0 1440 < th dose independent rect. 17 19
503 41.51 wind 9.0 270 < th dose independent rect. 13 16
557 41.54 humidity 80.0 1440 < th dose dependent rect. 16 20
559 41.55 humidity 70.0 14400 < th dose independent rect. 18 14
580 41.57 precipitation 0.1 90 < th dose independent rect. 3 14
581 41.57 temperature 15.0 90 > th dose independent rect. 9 18
588 41.57 precipitation 0.1 90 < th dose dependent rect. 3 14
610 41.58 atmosphere 995.0 270 > th dose independent rect. 12 17
620 41.59 atmosphere 1005.0 10 > th dose independent rect. 4 5
638 41.61 precipitation 0.1 90 < th dose independent rect. 3 6
643 41.61 precipitation 0.1 90 < th dose dependent rect. 3 6
645 41.61 radiation 40.0 1440 < th dose dependent rect. 18 10
662 41.63 humidity 80.0 1440 > th dose independent rect. 6 7
663 41.63 wind 9.0 270 < th dose independent rect. 1 15
684 41.65 humidity 70.0 1440 < th dose independent sin 11 NA
700 41.65 humidity 80.0 720 < th dose dependent rect. 18 4
705 41.66 humidity 80.0 1440 < th dose independent rect. 6 7
720 41.67 wind 1.0 270 > th dose independent rect. 4 8
732 41.68 temperature 30.0 720 < th dose independent rect. 17 2
736 41.68 humidity 70.0 1440 > th dose independent rect. 15 10
742 41.68 humidity 50.0 270 > th dose independent rect. 6 18
745 41.68 humidity 50.0 10 > th dose dependent rect. 4 5
752 41.69 humidity 70.0 14400 < th dose independent rect. 18 1
753 41.69 temperature 15.0 1440 > th dose independent rect. 10 5
754 41.69 humidity 70.0 1440 > th dose independent rect. 15 5
762 41.69 humidity 70.0 1440 > th dose dependent rect. 7 1
785 41.70 precipitation 0.1 270 < th dose independent rect. 12 17
794 41.70 precipitation 0.1 270 < th dose dependent rect. 12 17
799 41.71 radiation 30.0 4320 < th dose dependent rect. 7 1
805 41.71 humidity 50.0 10 > th dose dependent rect. 18 10
821 41.72 atmosphere 1015.0 90 < th dose independent rect. 3 14
836 41.72 radiation 1.0 270 < th dose dependent rect. 1 15
879 41.75 radiation 1.0 4320 > th dose dependent rect. 7 1
883 41.75 radiation 1.0 270 < th dose dependent rect. 1 10
885 41.75 radiation 1.0 270 < th dose dependent rect. 1 13
890 41.76 wind 9.0 90 < th dose independent rect. 3 6
891 41.76 temperature 10.0 90 > th dose independent rect. 3 6
893 41.76 humidity 50.0 90 > th dose independent rect. 3 6
895 41.76 atmosphere 995.0 90 > th dose independent rect. 3 6
896 41.76 atmosphere 1015.0 90 < th dose independent rect. 3 6
899 41.76 humidity 70.0 1440 > th dose independent rect. 17 8
904 41.76 humidity 70.0 1440 > th dose independent rect. 17 14
907 41.76 temperature 10.0 90 > th dose dependent rect. 3 6
926 41.77 radiation 1.0 270 < th dose dependent sin 3 NA
941 41.78 humidity 70.0 1440 > th dose independent rect. 17 3
957 41.78 radiation 40.0 90 < th dose independent rect. 3 6
975 41.79 temperature 30.0 90 < th dose independent rect. 3 6
979 41.79 temperature 15.0 270 > th dose independent rect. 21 14
994 41.80 humidity 70.0 14400 < th dose independent rect. 18 4