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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0536500

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to NAM-like protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3 (0.0399) R2 : 0.138
β1 : -0.225 (0.147) R2dD : 0.00481 R2D : -0.0053
β2 : -- (--) R2dC : -- R2C : --
β3 : 19.8 (2.34) R2dE : 1.69 R2E : -1.41
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -49.8 (6.19) R2dD*E : 1.53 R2D*E : -1.54
γ1 : 0.132 (0.0841) R2dN8 : 0.00627 R2N8 : -0.00361
σ : 0.736
deviance : 249.56
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_____
C
peak time of C : --
E
wheather : wind
threshold : 0.9875
memory length : 95
response mode : < th
dose dependency : dose independent
G
type of G : rect.
peak or start time of G : 21
open length of G : 1.29

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Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = < th, dose dependency = dose independent, type of G = rect.)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
247.78 0.74 3 -0.252 0.112 20.2 0.572 -50.3 0.132 9.12 0.9997 93 21 1.28
287.7 0.796 2.94 -0.00684 0.00115 -0.213 -0.494 -- 0.101 20.2 0.9109 109 21.1 1.37
248.85 0.735 3 -0.229 0.109 20.1 -- -50.5 0.133 10.2 0.9702 95 21 1.27
273.35 0.77 2.94 0.013 0.00399 2.13 -- -- 0.105 8.05 1.956 58 20.1 1.47
249.56 0.736 3 -0.225 -- 19.8 -- -49.8 0.132 -- 0.9875 95 21 1.29
287.75 0.795 2.94 -0.00932 0.000846 -- 0.503 -- 0.102 8.26 -- -- -- --
288.51 0.795 2.94 0.00629 0.0168 -- -- -- 0.102 14.6 -- -- -- --
269.45 0.765 2.95 0.000426 -- 2.23 -- -- 0.111 -- 2.074 58 20 1.33
267.53 0.762 2.93 -- 0.116 2.34 -- -- 0.139 8.52 2.1 54 20 1.37
288.53 0.794 2.94 0.00558 -- -- -- -- 0.101 -- -- -- -- --
288.51 0.795 2.94 -- 0.0167 -- -- -- 0.101 14.6 -- -- -- --
266.49 0.76 2.94 -- -- 2.37 -- -- 0.139 -- 2.09 47 20 1.37
288.53 0.793 2.94 -- -- -- -- -- 0.101 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 251.06 wind 1e+00 90 < th dose independent rect. 21 1
2 252.11 wind 1e+00 30 < th dose dependent rect. 21 2
29 263.16 wind 1e+00 10 < th dose dependent rect. 14 9
52 265.90 atmosphere 1e+03 10 < th dose independent rect. 19 3
57 265.90 atmosphere 1e+03 90 < th dose dependent rect. 19 3
58 265.90 atmosphere 1e+03 10 < th dose dependent rect. 19 4
62 265.91 atmosphere 1e+03 10 < th dose dependent rect. 20 2
67 265.92 atmosphere 1e+03 10 < th dose independent rect. 21 1
134 271.26 wind 1e+00 10 < th dose independent rect. 14 9
171 274.24 humidity 6e+01 30 > th dose independent rect. 13 23
196 275.27 humidity 6e+01 90 > th dose independent rect. 21 23
207 275.56 humidity 6e+01 90 > th dose independent rect. 5 23
210 275.74 wind 3e+00 720 < th dose dependent rect. 11 1
214 275.92 wind 3e+00 720 < th dose independent rect. 11 1
220 276.03 humidity 6e+01 10 < th dose independent rect. 14 22
221 276.03 radiation 1e+00 4320 < th dose dependent rect. 6 1
230 276.20 radiation 1e+00 4320 > th dose independent rect. 6 3
231 276.20 humidity 6e+01 90 < th dose independent rect. 11 23
233 276.23 humidity 6e+01 90 < th dose independent sin 20 NA
243 276.25 radiation 1e+00 4320 < th dose independent rect. 6 2
249 276.29 humidity 6e+01 90 < th dose independent rect. 8 8
273 276.37 humidity 6e+01 90 > th dose independent sin 20 NA
282 276.45 humidity 6e+01 90 > th dose independent rect. 7 13
301 276.51 humidity 6e+01 90 > th dose independent no NA NA
306 276.53 radiation 4e+01 720 < th dose independent rect. 16 19
308 276.54 humidity 6e+01 10 > th dose independent rect. 21 23
315 276.58 humidity 6e+01 90 < th dose independent no NA NA
440 276.66 radiation 1e+00 720 < th dose dependent rect. 23 22
444 276.74 humidity 6e+01 30 > th dose independent rect. 3 23
457 276.82 humidity 6e+01 90 > th dose independent rect. 9 11
462 276.84 humidity 6e+01 10 > th dose independent rect. 8 12
467 276.90 humidity 6e+01 90 < th dose independent rect. 11 5
468 276.92 radiation 1e+00 720 > th dose independent rect. 18 15
469 276.93 humidity 6e+01 10 < th dose independent sin 19 NA
471 276.96 humidity 6e+01 10 > th dose independent rect. 24 20
475 276.97 humidity 6e+01 90 > th dose independent rect. 24 23
479 277.00 humidity 6e+01 10 < th dose independent rect. 9 8
496 277.03 humidity 6e+01 10 < th dose independent rect. 11 23
499 277.04 radiation 1e+00 4320 > th dose independent rect. 6 6
501 277.05 humidity 6e+01 10 < th dose independent no NA NA
610 277.05 humidity 6e+01 30 < th dose dependent rect. 9 7
649 277.12 radiation 1e+00 720 < th dose dependent rect. 5 23
650 277.13 humidity 6e+01 10 > th dose independent no NA NA
668 277.14 radiation 1e+00 4320 < th dose independent rect. 6 6
688 277.16 radiation 1e+00 720 < th dose independent rect. 24 21
690 277.16 radiation 4e+01 270 > th dose dependent rect. 12 23
803 277.19 radiation 1e+00 720 > th dose independent rect. 12 21
804 277.19 radiation 4e+01 1440 > th dose dependent rect. 15 20
821 277.21 radiation 4e+01 1440 > th dose dependent rect. 8 3
861 277.24 humidity 6e+01 90 < th dose independent rect. 11 8
878 277.27 humidity 6e+01 10 > th dose independent sin 20 NA
909 277.39 radiation 4e+01 4320 < th dose independent rect. 2 8
914 277.40 radiation 4e+01 4320 < th dose independent rect. 4 6
916 277.40 radiation 4e+01 4320 < th dose independent rect. 19 15
917 277.40 radiation 4e+01 4320 < th dose independent rect. 17 17
918 277.40 radiation 1e+00 720 < th dose dependent rect. 5 16
922 277.41 humidity 6e+01 90 > th dose independent rect. 17 23
924 277.42 radiation 4e+01 4320 < th dose independent rect. 7 3
928 277.43 radiation 4e+01 4320 < th dose independent rect. 23 11
929 277.43 radiation 1e+00 4320 < th dose independent rect. 21 12
936 277.44 precipitation 1e-01 30 > th dose independent rect. 19 5
937 277.44 radiation 1e+00 4320 < th dose independent rect. 3 6
947 277.45 humidity 7e+01 720 > th dose independent rect. 9 3
970 277.48 precipitation 1e-01 30 > th dose dependent rect. 19 5
986 277.51 humidity 6e+01 720 > th dose dependent rect. 9 2