Os04g0535400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Histidine triad (HIT) protein family protein.
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Os04g0535400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Histidine triad (HIT) protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.37 | 0.227 | 9.02 | -0.209 | 0.701 | -0.759 | -0.161 | -1.43 | -0.0117 | 2.46 | 31.45 | 275 | -- | -- |
| 25 | 0.233 | 9.04 | -0.468 | 0.682 | -0.764 | -0.369 | -- | -0.065 | 2.39 | 32.29 | 292 | -- | -- |
| 23.45 | 0.226 | 9.02 | -0.193 | 0.703 | -0.761 | -- | -1.54 | -0.0075 | 2.43 | 31.5 | 269 | -- | -- |
| 25.65 | 0.236 | 9.05 | -0.445 | 0.688 | -0.781 | -- | -- | -0.0611 | 2.42 | 32.6 | 284 | -- | -- |
| 35.69 | 0.278 | 9.02 | -0.286 | -- | -0.857 | -- | -1.02 | -0.0214 | -- | 55.84 | 1016 | -- | -- |
| 32.2 | 0.266 | 9.02 | -0.277 | 0.515 | -- | -0.43 | -- | 0.0565 | 1.63 | -- | -- | -- | -- |
| 32.91 | 0.269 | 9.02 | -0.262 | 0.513 | -- | -- | -- | 0.0593 | 1.45 | -- | -- | -- | -- |
| 36.58 | 0.282 | 9.05 | -0.493 | -- | -0.87 | -- | -- | -0.076 | -- | 122.1 | 1009 | -- | -- |
| 30.32 | 0.256 | 9.03 | -- | 0.633 | -0.611 | -- | -- | 0.0162 | 2.25 | 36.31 | 281 | -- | -- |
| 49.1 | 0.327 | 9.02 | -0.242 | -- | -- | -- | -- | 0.0703 | -- | -- | -- | -- | -- |
| 34.73 | 0.276 | 9.02 | -- | 0.509 | -- | -- | -- | 0.0886 | 1.43 | -- | -- | -- | -- |
| 42.22 | 0.303 | 9.03 | -- | -- | -0.671 | -- | -- | 0.00624 | -- | 127.7 | 992 | -- | -- |
| 50.65 | 0.332 | 9.01 | -- | -- | -- | -- | -- | 0.0971 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 22.45 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 21 |
| 2 | 22.50 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 21 |
| 4 | 22.67 | temperature | 20 | 270 | > th | dose dependent | rect. | 16 | 23 |
| 11 | 22.88 | temperature | 15 | 270 | > th | dose dependent | rect. | 7 | 22 |
| 41 | 23.34 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 45 | 23.39 | temperature | 20 | 90 | > th | dose dependent | rect. | 9 | 14 |
| 46 | 23.39 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 23 |
| 48 | 23.42 | temperature | 10 | 270 | > th | dose dependent | rect. | 8 | 13 |
| 53 | 23.43 | temperature | 20 | 720 | > th | dose dependent | rect. | 18 | 20 |
| 55 | 23.44 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 60 | 23.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 20 |
| 69 | 23.51 | temperature | 30 | 270 | < th | dose dependent | rect. | 20 | 23 |
| 71 | 23.53 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 82 | 23.57 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 3 |
| 87 | 23.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 88 | 23.58 | temperature | 20 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 98 | 23.61 | temperature | 20 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 124 | 23.68 | temperature | 20 | 270 | > th | dose dependent | no | NA | NA |
| 149 | 23.71 | temperature | 20 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 171 | 23.75 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 197 | 23.78 | temperature | 20 | 1440 | > th | dose dependent | rect. | 2 | 7 |
| 213 | 23.80 | temperature | 15 | 720 | > th | dose dependent | rect. | 9 | 4 |
| 224 | 23.81 | temperature | 20 | 1440 | > th | dose dependent | sin | 8 | NA |
| 232 | 23.82 | temperature | 20 | 1440 | > th | dose dependent | rect. | 23 | 11 |
| 242 | 23.83 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 14 |
| 259 | 23.84 | temperature | 20 | 10 | > th | dose dependent | rect. | 9 | 15 |
| 305 | 23.88 | temperature | 20 | 10 | > th | dose dependent | no | NA | NA |
| 331 | 23.90 | temperature | 20 | 4320 | > th | dose dependent | rect. | 1 | 1 |
| 359 | 23.92 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 13 |
| 389 | 23.95 | temperature | 25 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 423 | 23.97 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 5 |
| 438 | 23.99 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 3 |
| 443 | 23.99 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 15 |
| 470 | 24.00 | temperature | 20 | 10 | > th | dose dependent | rect. | 17 | 23 |
| 637 | 24.09 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 11 |
| 674 | 24.11 | temperature | 10 | 10 | > th | dose dependent | no | NA | NA |
| 740 | 24.14 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 1 |