Os04g0535000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0535000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.29 | 0.374 | 9.56 | 0.0655 | 1.02 | -1.32 | -0.552 | 0.414 | 0.167 | 1.76 | 23.58 | 329 | -- | -- |
| 63.17 | 0.37 | 9.55 | 0.112 | 1.03 | -1.44 | -0.5 | -- | 0.196 | 1.7 | 23 | 310 | -- | -- |
| 64.2 | 0.373 | 9.54 | 0.12 | 1.02 | -1.45 | -- | 0.0418 | 0.186 | 1.83 | 23.05 | 320 | -- | -- |
| 64.17 | 0.373 | 9.55 | 0.132 | 1.03 | -1.45 | -- | -- | 0.192 | 1.82 | 23.04 | 318 | -- | -- |
| 104.67 | 0.476 | 9.58 | -0.0287 | -- | -1.49 | -- | 0.544 | 0.0662 | -- | 26.64 | 932 | -- | -- |
| 87.14 | 0.438 | 9.5 | 0.448 | 0.932 | -- | -0.529 | -- | 0.395 | 1.43 | -- | -- | -- | -- |
| 88.24 | 0.44 | 9.5 | 0.465 | 0.934 | -- | -- | -- | 0.397 | 1.53 | -- | -- | -- | -- |
| 106.07 | 0.48 | 9.57 | 0.0626 | -- | -1.49 | -- | -- | 0.0803 | -- | 26.3 | 942 | -- | -- |
| 64.57 | 0.374 | 9.55 | -- | 1.03 | -1.52 | -- | -- | 0.171 | 1.85 | 23 | 322 | -- | -- |
| 141.67 | 0.556 | 9.49 | 0.503 | -- | -- | -- | -- | 0.417 | -- | -- | -- | -- | -- |
| 93.94 | 0.453 | 9.51 | -- | 0.942 | -- | -- | -- | 0.345 | 1.55 | -- | -- | -- | -- |
| 106.16 | 0.48 | 9.57 | -- | -- | -1.52 | -- | -- | 0.0709 | -- | 26.3 | 942 | -- | -- |
| 148.34 | 0.568 | 9.5 | -- | -- | -- | -- | -- | 0.362 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.40 | temperature | 25 | 270 | < th | dose dependent | rect. | 19 | 17 |
| 10 | 63.08 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 18 |
| 36 | 63.63 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 49 | 63.89 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 16 |
| 126 | 64.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 16 | 14 |
| 162 | 65.10 | temperature | 25 | 270 | < th | dose dependent | no | NA | NA |
| 211 | 65.47 | temperature | 10 | 720 | > th | dose dependent | rect. | 18 | 10 |
| 241 | 65.69 | temperature | 10 | 720 | > th | dose dependent | sin | 14 | NA |
| 244 | 65.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 367 | 66.38 | temperature | 25 | 720 | < th | dose dependent | rect. | 23 | 23 |
| 468 | 66.83 | temperature | 25 | 270 | < th | dose dependent | sin | 10 | NA |
| 600 | 67.37 | temperature | 10 | 270 | > th | dose dependent | sin | 10 | NA |
| 650 | 67.48 | temperature | 25 | 1440 | < th | dose dependent | rect. | 9 | 1 |
| 968 | 68.23 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 4 |