Os04g0534200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein kinase-like domain containing protein.
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Os04g0534200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein kinase-like domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.96 | 0.488 | 8.5 | -0.425 | 1.47 | -2.66 | 0.405 | -3.83 | 0.269 | 5.17 | 0.2103 | 1463 | -- | -- |
| 112.77 | 0.495 | 8.54 | -0.68 | 1.5 | -1.81 | 0.689 | -- | 0.261 | 4.89 | 0.3277 | 1495 | -- | -- |
| 108.33 | 0.485 | 8.5 | -0.424 | 1.47 | -2.67 | -- | -3.88 | 0.27 | 5.2 | 0.2014 | 1462 | -- | -- |
| 111.29 | 0.491 | 8.57 | -0.682 | 1.5 | -1.77 | -- | -- | 0.196 | 5.07 | 0.97 | 1483 | -- | -- |
| 217.75 | 0.687 | 8.52 | -0.32 | -- | -2.64 | -- | -4.03 | 0.308 | -- | 0.2271 | 1439 | -- | -- |
| 141.87 | 0.558 | 8.52 | -0.289 | 1.47 | -- | 0.441 | -- | 0.411 | 5.51 | -- | -- | -- | -- |
| 142.35 | 0.559 | 8.52 | -0.288 | 1.47 | -- | -- | -- | 0.41 | 5.53 | -- | -- | -- | -- |
| 221.96 | 0.694 | 8.59 | -0.594 | -- | -1.64 | -- | -- | 0.223 | -- | 1.8 | 1436 | -- | -- |
| 121.94 | 0.514 | 8.58 | -- | 1.5 | -1.46 | -- | -- | 0.24 | 5.05 | 1.83 | 1484 | -- | -- |
| 254.51 | 0.745 | 8.54 | -0.239 | -- | -- | -- | -- | 0.445 | -- | -- | -- | -- | -- |
| 144.53 | 0.562 | 8.52 | -- | 1.46 | -- | -- | -- | 0.442 | 5.53 | -- | -- | -- | -- |
| 230.14 | 0.707 | 8.57 | -- | -- | -1.37 | -- | -- | 0.306 | -- | 2.228 | 1439 | -- | -- |
| 256.02 | 0.747 | 8.54 | -- | -- | -- | -- | -- | 0.472 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 107.11 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 4 | 107.82 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 19 |
| 6 | 107.99 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 19 |
| 15 | 108.56 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 23 |
| 45 | 110.33 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 8 |
| 72 | 110.66 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 77 | 110.74 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 5 |
| 82 | 110.79 | wind | 7 | 43200 | < th | dose independent | rect. | 12 | 5 |
| 87 | 110.85 | wind | 5 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 89 | 110.87 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 121 | 110.99 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 129 | 111.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 2 | 23 |
| 130 | 111.00 | radiation | 1 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 170 | 111.25 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 233 | 111.82 | radiation | 1 | 1440 | < th | dose independent | sin | 15 | NA |
| 238 | 111.85 | radiation | 1 | 1440 | > th | dose independent | sin | 15 | NA |
| 242 | 111.86 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 265 | 111.96 | radiation | 1 | 1440 | > th | dose independent | rect. | 11 | 8 |
| 290 | 112.03 | temperature | 25 | 1440 | > th | dose dependent | rect. | 16 | 1 |
| 303 | 112.07 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 4 |
| 322 | 112.11 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 7 |
| 355 | 112.25 | humidity | 90 | 43200 | > th | dose dependent | rect. | 22 | 2 |
| 359 | 112.27 | humidity | 90 | 43200 | > th | dose dependent | rect. | 20 | 4 |
| 369 | 112.32 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 12 |
| 373 | 112.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 390 | 112.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 18 | 10 |
| 489 | 112.85 | temperature | 25 | 1440 | > th | dose dependent | rect. | 14 | 17 |
| 558 | 113.09 | humidity | 90 | 43200 | > th | dose independent | rect. | 20 | 4 |
| 588 | 113.24 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 2 |
| 603 | 113.27 | temperature | 25 | 1440 | > th | dose dependent | sin | 16 | NA |
| 644 | 113.36 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 649 | 113.37 | radiation | 1 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 652 | 113.37 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 14 |
| 665 | 113.41 | radiation | 1 | 1440 | > th | dose independent | rect. | 18 | 23 |
| 682 | 113.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 23 |
| 685 | 113.46 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 687 | 113.46 | radiation | 1 | 1440 | < th | dose independent | rect. | 5 | 14 |
| 699 | 113.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 23 | 20 |
| 720 | 113.54 | radiation | 1 | 1440 | > th | dose independent | rect. | 5 | 14 |
| 734 | 113.54 | radiation | 20 | 14400 | > th | dose dependent | rect. | 16 | 15 |
| 756 | 113.59 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 757 | 113.59 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 12 |
| 762 | 113.60 | radiation | 1 | 1440 | < th | dose independent | no | NA | NA |
| 799 | 113.66 | wind | 7 | 43200 | < th | dose independent | sin | 21 | NA |
| 828 | 113.72 | radiation | 1 | 1440 | > th | dose independent | no | NA | NA |
| 830 | 113.72 | wind | 7 | 43200 | < th | dose independent | rect. | 16 | 2 |
| 878 | 113.73 | wind | 7 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 966 | 113.95 | humidity | 90 | 1440 | > th | dose dependent | rect. | 20 | 4 |
| 983 | 114.03 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 17 |