Os04g0534100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0534100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.18 | 0.326 | 7.56 | 0.324 | 0.533 | 2.28 | 0.0168 | 2.2 | -0.00815 | 4.01 | 0.59 | 1435 | -- | -- |
| 50.05 | 0.329 | 7.53 | 0.528 | 0.527 | 1.76 | -0.0279 | -- | 0.0186 | 4.05 | 0.7279 | 1430 | -- | -- |
| 48.07 | 0.323 | 7.56 | 0.325 | 0.536 | 2.28 | -- | 2.24 | -0.0146 | 3.96 | 0.49 | 1433 | -- | -- |
| 50.03 | 0.329 | 7.53 | 0.529 | 0.527 | 1.76 | -- | -- | 0.024 | 3.97 | 0.76 | 1430 | -- | -- |
| 61.29 | 0.365 | 7.56 | 0.363 | -- | 2.34 | -- | 2.18 | -0.00135 | -- | 0.5014 | 1467 | -- | -- |
| 84.55 | 0.431 | 7.58 | 0.087 | 0.506 | -- | -0.201 | -- | -0.206 | 4.18 | -- | -- | -- | -- |
| 84.67 | 0.431 | 7.58 | 0.0891 | 0.505 | -- | -- | -- | -0.205 | 4.17 | -- | -- | -- | -- |
| 59.57 | 0.359 | 7.53 | 0.449 | -- | 1.73 | -- | -- | 0.0322 | -- | 0.8081 | 3139 | -- | -- |
| 56.46 | 0.35 | 7.53 | -- | 0.544 | 1.48 | -- | -- | -0.0369 | 3.89 | 1.209 | 1423 | -- | -- |
| 98.47 | 0.464 | 7.58 | 0.109 | -- | -- | -- | -- | -0.191 | -- | -- | -- | -- | -- |
| 84.88 | 0.431 | 7.58 | -- | 0.506 | -- | -- | -- | -0.214 | 4.16 | -- | -- | -- | -- |
| 62.08 | 0.367 | 7.56 | -- | -- | 1.43 | -- | -- | -0.0516 | -- | 1.525 | 3337 | -- | -- |
| 98.78 | 0.464 | 7.58 | -- | -- | -- | -- | -- | -0.203 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.92 | radiation | 1 | 720 | < th | dose dependent | rect. | 5 | 21 |
| 2 | 48.07 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 22 |
| 13 | 49.29 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 17 |
| 19 | 49.40 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 16 |
| 24 | 49.42 | radiation | 1 | 1440 | < th | dose dependent | rect. | 5 | 14 |
| 27 | 49.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 17 | 23 |
| 31 | 49.58 | radiation | 1 | 1440 | < th | dose dependent | rect. | 22 | 23 |
| 33 | 49.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 21 |
| 35 | 49.59 | radiation | 1 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 36 | 49.60 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 48 | 49.61 | radiation | 1 | 1440 | < th | dose dependent | rect. | 24 | 19 |
| 62 | 49.63 | radiation | 1 | 1440 | < th | dose dependent | sin | 23 | NA |
| 78 | 49.69 | radiation | 1 | 1440 | < th | dose dependent | rect. | 11 | 23 |
| 83 | 49.74 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 17 |
| 87 | 49.79 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 13 |
| 93 | 49.81 | radiation | 1 | 1440 | < th | dose dependent | rect. | 8 | 11 |
| 98 | 49.84 | radiation | 1 | 1440 | < th | dose dependent | sin | 15 | NA |
| 115 | 49.99 | radiation | 1 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 123 | 50.07 | radiation | 1 | 720 | > th | dose independent | rect. | 8 | 22 |
| 153 | 50.29 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 13 |
| 162 | 50.34 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 9 |
| 165 | 50.35 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 11 |
| 169 | 50.36 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 188 | 50.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 192 | 50.50 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 17 |
| 207 | 50.62 | temperature | 20 | 720 | > th | dose dependent | rect. | 7 | 20 |
| 214 | 50.68 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 3 |
| 232 | 50.77 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 11 |
| 236 | 50.81 | temperature | 20 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 298 | 51.07 | wind | 5 | 43200 | > th | dose dependent | rect. | 12 | 10 |
| 300 | 51.07 | temperature | 30 | 270 | < th | dose dependent | rect. | 11 | 22 |
| 313 | 51.10 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 11 |
| 330 | 51.14 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 7 |
| 347 | 51.18 | temperature | 25 | 1440 | > th | dose independent | sin | 20 | NA |
| 365 | 51.24 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 528 | 51.58 | temperature | 25 | 4320 | < th | dose independent | rect. | 17 | 1 |
| 541 | 51.60 | temperature | 25 | 1440 | < th | dose independent | sin | 19 | NA |
| 550 | 51.62 | wind | 5 | 43200 | > th | dose dependent | sin | 19 | NA |
| 557 | 51.65 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 22 |
| 605 | 51.76 | radiation | 1 | 4320 | < th | dose dependent | rect. | 16 | 2 |
| 666 | 51.84 | temperature | 25 | 4320 | > th | dose independent | rect. | 17 | 1 |
| 685 | 51.87 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 13 |
| 705 | 51.90 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 719 | 51.91 | temperature | 20 | 1440 | > th | dose dependent | rect. | 4 | 14 |
| 740 | 51.94 | wind | 7 | 43200 | > th | dose independent | rect. | 7 | 14 |
| 764 | 51.96 | wind | 7 | 43200 | < th | dose independent | sin | 20 | NA |
| 802 | 51.99 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 17 |
| 848 | 52.04 | temperature | 25 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 849 | 52.04 | wind | 5 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 864 | 52.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 23 |
| 894 | 52.08 | wind | 7 | 43200 | > th | dose independent | sin | 21 | NA |
| 895 | 52.08 | wind | 7 | 43200 | < th | dose independent | rect. | 13 | 8 |
| 943 | 52.11 | temperature | 20 | 1440 | > th | dose dependent | rect. | 15 | 3 |
| 952 | 52.12 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 20 |