Os04g0534000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF821, CAP10-like family protein.
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Os04g0534000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF821, CAP10-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 109.23 | 0.491 | 10.2 | -2.53 | 1.54 | 1.41 | -0.189 | -2.48 | -0.701 | 13.1 | 26.03 | 5875 | -- | -- |
| 113.12 | 0.495 | 10.1 | -2 | 1.57 | 1.4 | -0.189 | -- | -0.707 | 13 | 24.05 | 5908 | -- | -- |
| 109.37 | 0.487 | 10.2 | -2.55 | 1.54 | 1.42 | -- | -2.54 | -0.704 | 13.1 | 26.1 | 5887 | -- | -- |
| 111.35 | 0.491 | 10.1 | -1.87 | 1.56 | 1.21 | -- | -- | -0.563 | 13.1 | 25.37 | 5893 | -- | -- |
| 192.04 | 0.649 | 10.2 | -2.15 | -- | 2.63 | -- | -4.27 | -0.604 | -- | 26.1 | 5887 | -- | -- |
| 166.41 | 0.605 | 10.1 | -1.39 | 1.53 | -- | -0.379 | -- | -0.411 | 13.1 | -- | -- | -- | -- |
| 167 | 0.605 | 10.1 | -1.4 | 1.53 | -- | -- | -- | -0.413 | 13.1 | -- | -- | -- | -- |
| 188.67 | 0.643 | 10.1 | -1.76 | -- | 2.29 | -- | -- | -0.567 | -- | 25.37 | 5893 | -- | -- |
| 190.66 | 0.643 | 10 | -- | 1.56 | 0.76 | -- | -- | -0.229 | 13.2 | 28.26 | 5938 | -- | -- |
| 311.7 | 0.825 | 10.1 | -1.46 | -- | -- | -- | -- | -0.443 | -- | -- | -- | -- | -- |
| 218.93 | 0.692 | 10 | -- | 1.55 | -- | -- | -- | -0.257 | 13.1 | -- | -- | -- | -- |
| 269.1 | 0.767 | 10.1 | -- | -- | 2.03 | -- | -- | -0.361 | -- | 25.37 | 5893 | -- | -- |
| 368.08 | 0.895 | 10.1 | -- | -- | -- | -- | -- | -0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 109.85 | temperature | 30 | 14400 | < th | dose independent | rect. | 15 | 1 |
| 2 | 109.98 | temperature | 30 | 14400 | > th | dose independent | rect. | 15 | 1 |
| 12 | 111.48 | temperature | 25 | 14400 | > th | dose dependent | rect. | 17 | 1 |
| 16 | 111.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 10 |
| 17 | 111.95 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 19 |
| 18 | 111.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 6 |
| 19 | 111.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 8 |
| 20 | 111.96 | temperature | 30 | 14400 | < th | dose independent | rect. | 14 | 15 |
| 31 | 112.06 | temperature | 30 | 14400 | > th | dose independent | rect. | 14 | 19 |
| 182 | 113.69 | temperature | 30 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 217 | 113.91 | temperature | 30 | 14400 | < th | dose independent | sin | 14 | NA |
| 238 | 113.99 | temperature | 30 | 14400 | > th | dose independent | sin | 14 | NA |
| 292 | 114.13 | temperature | 20 | 14400 | > th | dose dependent | sin | 19 | NA |
| 324 | 114.23 | temperature | 25 | 4320 | > th | dose dependent | rect. | 23 | 16 |
| 533 | 114.68 | temperature | 25 | 4320 | > th | dose dependent | rect. | 7 | 8 |
| 711 | 114.89 | temperature | 25 | 4320 | > th | dose dependent | rect. | 9 | 4 |
| 724 | 114.90 | temperature | 25 | 4320 | > th | dose dependent | sin | 5 | NA |
| 921 | 115.11 | temperature | 20 | 14400 | > th | dose dependent | no | NA | NA |