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Os04g0533000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to RNA helicase (Fragment).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.6 (0.0122) R2 : 0.174
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.252 (0.0256) R2dN8 : 0.225 R2N8 : 0.174
σ : 0.229
deviance : 24.12
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = atmosphere, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
15.79 0.187 10.7 -0.496 0.291 -2.06 0.243 10.8 0.285 10.7 1000 272 -- --
17.05 0.192 10.6 0.197 0.288 -0.402 0.234 -- 0.279 11 996.1 261 -- --
16.03 0.186 10.7 -0.486 0.291 -2.06 -- 10.7 0.285 10.6 1000 271 -- --
17.2 0.193 10.6 0.202 0.284 -0.36 -- -- 0.284 10.5 996.3 241 -- --
21.14 0.214 10.7 -0.409 -- -2.1 -- 10.9 0.285 -- 999.4 299 -- --
17.87 0.198 10.6 0.205 0.283 -- 0.217 -- 0.276 10.7 -- -- -- --
18.06 0.199 10.6 0.213 0.283 -- -- -- 0.276 10.5 -- -- -- --
22.31 0.22 10.6 0.187 -- -0.36 -- -- 0.284 -- 996.4 259 -- --
18.23 0.199 10.6 -- 0.293 -0.387 -- -- 0.258 10.4 996.3 241 -- --
22.97 0.224 10.6 0.208 -- -- -- -- 0.275 -- -- -- -- --
19.26 0.205 10.6 -- 0.282 -- -- -- 0.252 10.5 -- -- -- --
23.28 0.225 10.6 -- -- -0.316 -- -- 0.26 -- 996.5 135 -- --
24.12 0.229 10.6 -- -- -- -- -- 0.252 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 15.48 wind 5 4320 < th dose independent rect. 20 1
2 15.49 wind 5 4320 > th dose dependent rect. 20 7
3 15.51 temperature 20 720 > th dose independent rect. 4 18
4 15.53 wind 5 4320 > th dose independent rect. 20 1
11 15.63 wind 1 1440 < th dose independent rect. 3 2
14 15.66 temperature 10 720 > th dose dependent rect. 4 2
15 15.67 atmosphere 1005 14400 < th dose independent rect. 22 1
16 15.67 wind 1 4320 < th dose dependent rect. 4 2
19 15.68 temperature 20 720 > th dose independent rect. 4 2
22 15.70 atmosphere 995 14400 < th dose independent rect. 16 1
26 15.70 atmosphere 995 14400 < th dose dependent rect. 16 1
36 15.71 atmosphere 995 720 > th dose independent rect. 15 12
46 15.73 wind 5 4320 > th dose independent rect. 20 4
47 15.74 atmosphere 995 14400 > th dose independent rect. 18 2
49 15.75 wind 5 4320 < th dose independent rect. 20 4
53 15.75 temperature 20 270 > th dose independent rect. 3 12
59 15.77 atmosphere 1000 270 < th dose independent rect. 9 22
61 15.78 atmosphere 995 14400 > th dose independent rect. 16 4
63 15.78 atmosphere 995 14400 > th dose independent rect. 12 7
67 15.78 atmosphere 1000 270 < th dose independent rect. 1 21
75 15.79 atmosphere 995 14400 > th dose independent rect. 16 1
91 15.80 atmosphere 1005 14400 > th dose independent rect. 3 1
92 15.80 atmosphere 995 14400 > th dose independent rect. 9 10
99 15.81 atmosphere 1000 270 > th dose independent no NA NA
112 15.81 wind 3 4320 > th dose dependent rect. 20 1
117 15.82 atmosphere 1005 14400 < th dose independent rect. 3 1
120 15.82 atmosphere 995 14400 > th dose independent rect. 12 3
156 15.83 temperature 20 4320 > th dose independent rect. 21 2
161 15.83 temperature 20 720 > th dose independent rect. 3 5
180 15.84 atmosphere 1000 270 < th dose independent no NA NA
222 15.86 temperature 15 10 > th dose dependent rect. 5 12
252 15.90 temperature 20 4320 < th dose independent rect. 21 2
266 15.91 humidity 80 1440 < th dose independent rect. 22 13
268 15.91 temperature 20 1440 < th dose independent rect. 3 19
288 15.92 atmosphere 995 720 > th dose independent rect. 15 20
296 15.93 atmosphere 1005 14400 > th dose independent rect. 10 2
302 15.93 temperature 20 4320 > th dose independent rect. 18 6
327 15.93 temperature 10 270 > th dose dependent rect. 3 12
341 15.94 atmosphere 1005 14400 < th dose independent rect. 21 7
362 15.95 atmosphere 1005 14400 < th dose independent rect. 11 1
369 15.95 temperature 15 10 > th dose dependent rect. 5 19
379 15.96 atmosphere 1005 14400 > th dose independent rect. 3 9
382 15.96 humidity 80 1440 > th dose independent rect. 23 12
388 15.96 humidity 60 720 > th dose dependent rect. 3 4
392 15.97 temperature 20 1440 < th dose independent rect. 3 2
397 15.97 atmosphere 995 720 > th dose independent rect. 15 4
403 15.97 temperature 30 1440 < th dose independent rect. 2 8
417 15.97 temperature 20 1440 > th dose dependent rect. 1 1
434 15.98 temperature 30 1440 < th dose independent rect. 4 6
436 15.98 atmosphere 1005 14400 > th dose independent rect. 6 6
447 15.98 radiation 10 43200 < th dose dependent rect. 21 4
449 15.99 atmosphere 1000 270 < th dose independent sin 19 NA
470 15.99 temperature 20 1440 > th dose independent rect. 18 12
473 15.99 atmosphere 995 720 > th dose independent rect. 7 20
487 16.00 temperature 30 4320 < th dose independent rect. 6 4
495 16.00 atmosphere 995 720 > th dose independent rect. 8 10
504 16.00 atmosphere 1005 14400 < th dose independent rect. 20 16
543 16.01 temperature 30 4320 < th dose independent rect. 20 14
580 16.02 atmosphere 1005 14400 < th dose independent rect. 2 10
589 16.02 wind 5 4320 > th dose independent rect. 19 16
593 16.02 atmosphere 995 720 > th dose independent rect. 16 18
667 16.04 atmosphere 1005 14400 < th dose independent rect. 2 7
675 16.04 temperature 20 1440 < th dose independent rect. 18 12
697 16.04 atmosphere 1000 10 < th dose independent rect. 2 22
705 16.04 atmosphere 1000 10 < th dose independent rect. 13 23
710 16.05 temperature 20 4320 > th dose independent sin 16 NA
711 16.05 atmosphere 1000 10 > th dose independent no NA NA
713 16.05 atmosphere 1000 10 < th dose independent no NA NA
714 16.05 wind 5 4320 > th dose independent rect. 9 1
725 16.05 atmosphere 1005 14400 < th dose independent rect. 8 4
732 16.05 atmosphere 1005 14400 < th dose independent rect. 6 6
748 16.05 atmosphere 1000 10 > th dose independent rect. 17 12
754 16.05 atmosphere 995 720 > th dose independent rect. 6 14
771 16.05 atmosphere 1000 10 < th dose independent rect. 5 23
772 16.05 atmosphere 1000 10 < th dose independent rect. 9 23
774 16.05 atmosphere 1000 10 < th dose independent rect. 11 23
778 16.05 atmosphere 1000 10 < th dose independent rect. 15 23
779 16.05 atmosphere 1000 10 < th dose independent rect. 23 23
792 16.05 temperature 10 720 > th dose dependent rect. 20 19
796 16.06 temperature 30 4320 < th dose independent rect. 9 1
798 16.06 atmosphere 995 720 > th dose independent rect. 16 2
836 16.06 wind 5 4320 < th dose independent rect. 19 15
860 16.06 atmosphere 1000 10 < th dose independent rect. 17 23
862 16.06 atmosphere 1000 30 < th dose independent rect. 19 23
864 16.06 atmosphere 1000 10 < th dose independent rect. 21 23
868 16.07 atmosphere 1005 14400 < th dose independent sin 7 NA
870 16.07 atmosphere 1005 14400 > th dose independent rect. 6 1
940 16.07 temperature 30 30 < th dose dependent rect. 24 20
941 16.07 temperature 30 10 < th dose dependent rect. 24 22
945 16.08 atmosphere 1005 14400 < th dose independent rect. 8 1
948 16.08 humidity 80 720 > th dose independent rect. 3 4