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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0532700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.65 (0.0302) R2 : 0.58
β1 : -- (--) R2dD : -- R2D : --
β2 : 4.58 (0.32) R2dC : 3.54 R2C : -1.01
β3 : 2.72 (0.287) R2dE : 1.55 R2E : -3
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.302 (0.064) R2dN8 : 0.0306 R2N8 : 0.0402
σ : 0.566
deviance : 147.9
__
_____
C
peak time of C : 14.4
E
wheather : radiation
threshold : 0.02302
memory length : 323
response mode : < th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 6.88
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
141.37 0.559 4.65 0.238 4.57 2.7 -1.4 -0.123 -0.302 14.4 0.02002 309 6.8 --
141.23 0.553 4.64 0.236 4.56 2.69 -1.27 -- -0.3 14.4 0.01995 315 6.91 --
141.62 0.554 4.65 0.218 4.56 2.69 -- 1.09 -0.305 14.4 0.02 313 6.91 --
147.02 0.565 4.65 0.226 4.58 2.72 -- -- -0.293 14.3 0.01998 319 7.01 --
233.53 0.712 4.65 -0.337 -- 1.76 -- -2.24 -0.562 -- 83.4 2441 0.00771 --
170.15 0.612 4.68 0.125 1.66 -- -1.42 -- -0.39 14.8 -- -- -- --
177.12 0.623 4.68 0.0909 1.66 -- -- -- -0.399 14.8 -- -- -- --
185.37 0.634 4.67 0.123 -- 1.82 -- -- -0.351 -- 192.4 1137 0.548 --
147.9 0.566 4.65 -- 4.58 2.72 -- -- -0.302 14.4 0.02302 323 6.88 --
335.9 0.856 4.69 0.0203 -- -- -- -- -0.441 -- -- -- -- --
177.34 0.623 4.68 -- 1.65 -- -- -- -0.409 14.8 -- -- -- --
178.88 0.623 4.67 -- -- 1.72 -- -- -0.359 -- 957.8 1041 3.73e-07 --
335.91 0.855 4.69 -- -- -- -- -- -0.443 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 138.29 humidity 90.0 270 < th dose independent rect. 8 7
2 138.30 temperature 15.0 270 > th dose independent rect. 8 7
3 138.52 radiation 1.0 270 > th dose independent rect. 8 7
4 138.85 wind 7.0 270 < th dose independent rect. 8 7
6 139.57 wind 7.0 270 < th dose independent rect. 20 19
7 139.94 wind 7.0 270 < th dose independent rect. 19 9
8 140.17 atmosphere 1015.0 270 < th dose independent rect. 15 17
9 140.18 radiation 40.0 270 < th dose independent rect. 15 17
10 140.19 wind 7.0 270 < th dose independent rect. 21 17
12 140.30 precipitation 0.1 270 < th dose independent rect. 8 7
13 140.30 precipitation 0.1 270 < th dose dependent rect. 8 7
17 140.43 atmosphere 1015.0 270 < th dose independent rect. 8 7
18 140.43 temperature 10.0 270 > th dose independent rect. 15 17
19 140.66 atmosphere 995.0 270 > th dose independent rect. 8 7
20 140.68 wind 9.0 270 < th dose independent rect. 15 17
28 141.36 humidity 60.0 270 > th dose independent rect. 19 9
29 141.38 temperature 10.0 270 > th dose independent rect. 19 9
30 141.38 temperature 30.0 270 < th dose independent rect. 19 9
32 141.38 atmosphere 995.0 270 > th dose independent rect. 19 9
33 141.38 radiation 1.0 270 < th dose independent rect. 19 9
38 141.38 temperature 10.0 270 > th dose independent rect. 4 15
39 141.38 atmosphere 1015.0 270 < th dose independent rect. 4 15
40 141.38 radiation 1.0 270 < th dose dependent rect. 19 9
45 141.40 wind 7.0 270 < th dose independent rect. 20 7
46 141.52 precipitation 0.1 270 < th dose independent rect. 15 17
47 141.52 precipitation 0.1 270 < th dose dependent rect. 15 17
50 141.63 precipitation 0.1 270 < th dose independent rect. 19 9
51 141.63 precipitation 0.1 270 < th dose dependent rect. 19 9
53 141.82 wind 1.0 270 > th dose independent rect. 8 7
56 141.88 atmosphere 995.0 270 > th dose independent rect. 15 17
58 141.94 precipitation 0.1 270 < th dose independent rect. 4 15
59 141.94 precipitation 0.1 270 < th dose dependent rect. 4 15
60 142.16 wind 7.0 30 < th dose independent rect. 10 8
72 142.52 precipitation 0.1 270 < th dose independent rect. 20 19
73 142.52 precipitation 0.1 270 < th dose dependent rect. 20 19
75 142.61 humidity 60.0 270 > th dose independent rect. 1 9
76 142.62 temperature 10.0 270 > th dose independent rect. 20 7
77 142.62 temperature 30.0 270 < th dose independent rect. 20 7
78 142.62 humidity 50.0 270 > th dose independent rect. 20 7
81 142.62 atmosphere 995.0 270 > th dose independent rect. 20 7
82 142.62 radiation 1.0 270 < th dose independent rect. 20 7
89 142.62 temperature 10.0 270 > th dose independent rect. 3 17
90 142.62 atmosphere 1015.0 270 < th dose independent rect. 3 17
91 142.62 radiation 1.0 270 < th dose dependent rect. 20 7
102 142.68 atmosphere 1015.0 270 < th dose independent rect. 14 7
115 142.90 radiation 40.0 270 < th dose independent rect. 14 6
117 142.91 temperature 10.0 270 > th dose dependent rect. 15 5
141 143.01 wind 9.0 270 < th dose independent rect. 4 15
142 143.02 wind 1.0 270 > th dose independent rect. 15 5
146 143.09 humidity 50.0 270 > th dose dependent rect. 2 8
147 143.10 precipitation 0.1 270 < th dose independent rect. 21 17
148 143.10 precipitation 0.1 270 < th dose dependent rect. 21 17
149 143.11 temperature 10.0 270 > th dose independent rect. 15 5
150 143.11 atmosphere 1015.0 270 < th dose independent rect. 15 5
151 143.11 temperature 10.0 270 > th dose independent rect. 20 19
154 143.14 wind 9.0 270 < th dose independent rect. 15 5
155 143.14 humidity 50.0 270 > th dose independent rect. 8 7
173 143.17 wind 7.0 90 < th dose independent rect. 23 17
176 143.20 atmosphere 995.0 270 > th dose independent rect. 20 19
177 143.22 precipitation 0.1 270 < th dose independent rect. 15 5
178 143.22 precipitation 0.1 270 < th dose dependent rect. 15 5
187 143.45 wind 9.0 270 < th dose independent rect. 10 15
188 143.46 humidity 90.0 270 < th dose independent rect. 15 5
199 143.58 wind 1.0 270 > th dose independent rect. 14 7
202 143.60 temperature 20.0 270 > th dose independent rect. 15 5
209 143.74 temperature 10.0 270 > th dose dependent rect. 15 17
215 143.79 temperature 10.0 270 > th dose independent rect. 14 7
217 143.79 temperature 10.0 270 > th dose independent rect. 21 17
218 143.79 atmosphere 995.0 270 > th dose independent rect. 21 17
220 143.81 wind 9.0 270 < th dose independent rect. 3 17
231 143.95 atmosphere 995.0 270 > th dose independent rect. 15 5
232 143.98 wind 9.0 270 < th dose independent rect. 14 7
238 144.00 precipitation 0.1 270 < th dose independent rect. 14 7
239 144.00 temperature 10.0 270 > th dose independent rect. 1 9
240 144.00 atmosphere 995.0 270 > th dose independent rect. 1 9
241 144.00 atmosphere 1015.0 270 < th dose independent rect. 1 9
242 144.00 temperature 10.0 270 > th dose independent rect. 10 15
243 144.00 precipitation 0.1 270 < th dose dependent rect. 14 7
265 144.23 wind 9.0 270 < th dose independent rect. 1 9
270 144.27 wind 1.0 270 > th dose independent rect. 20 19
285 144.43 wind 7.0 270 < th dose independent rect. 9 17
294 144.58 temperature 10.0 30 > th dose dependent rect. 18 16
298 144.62 atmosphere 995.0 270 > th dose independent rect. 3 17
308 144.71 precipitation 0.1 270 < th dose independent rect. 10 15
309 144.71 precipitation 0.1 270 < th dose dependent rect. 10 15
320 144.84 humidity 50.0 270 > th dose independent rect. 20 19
327 144.90 humidity 50.0 270 > th dose independent rect. 15 17
349 145.04 atmosphere 1000.0 30 > th dose independent rect. 23 17
357 145.09 atmosphere 995.0 270 > th dose independent rect. 4 15
359 145.10 wind 9.0 270 < th dose dependent rect. 20 7
366 145.17 radiation 40.0 90 < th dose dependent rect. 15 8
374 145.24 precipitation 0.1 270 < th dose independent rect. 1 9
375 145.24 precipitation 0.1 270 < th dose dependent rect. 1 9
383 145.31 radiation 40.0 270 < th dose dependent rect. 15 17
384 145.32 temperature 20.0 90 > th dose independent rect. 16 7
392 145.38 wind 9.0 270 < th dose independent rect. 2 7
393 145.38 temperature 10.0 270 > th dose independent rect. 2 7
396 145.38 atmosphere 995.0 270 > th dose independent rect. 2 7
397 145.38 atmosphere 1015.0 270 < th dose independent rect. 2 7
398 145.38 temperature 10.0 270 > th dose independent rect. 9 17
401 145.40 wind 1.0 270 > th dose independent rect. 20 7
423 145.49 wind 1.0 270 > th dose independent rect. 21 17
428 145.54 wind 7.0 270 < th dose independent rect. 8 19
451 145.69 atmosphere 995.0 270 > th dose dependent rect. 15 4
455 145.72 precipitation 0.1 10 < th dose independent rect. 23 17
456 145.72 precipitation 0.1 10 < th dose dependent rect. 23 17
461 145.75 humidity 50.0 90 > th dose independent rect. 17 17
483 145.85 atmosphere 995.0 90 > th dose independent rect. 16 7
486 145.86 precipitation 0.1 90 < th dose independent rect. 23 17
489 145.86 precipitation 0.1 90 < th dose dependent rect. 23 17
495 145.89 humidity 60.0 10 > th dose independent rect. 18 16
496 145.90 temperature 15.0 90 > th dose independent rect. 23 16
512 145.98 wind 1.0 270 > th dose independent rect. 10 15
522 146.07 precipitation 0.1 30 < th dose independent rect. 10 8
524 146.07 wind 9.0 10 < th dose dependent rect. 10 8
525 146.07 precipitation 0.1 30 < th dose dependent rect. 10 8
531 146.09 temperature 30.0 270 < th dose independent rect. 2 7
538 146.13 precipitation 0.1 270 < th dose independent rect. 2 7
541 146.13 precipitation 0.1 270 < th dose dependent rect. 2 7
550 146.16 radiation 1.0 30 > th dose independent rect. 10 8
597 146.29 radiation 1.0 270 < th dose dependent sin 12 NA
602 146.31 wind 9.0 270 < th dose dependent rect. 8 7
604 146.32 temperature 10.0 10 > th dose dependent rect. 16 7
607 146.33 wind 9.0 30 < th dose independent rect. 18 16
608 146.35 humidity 50.0 270 > th dose independent rect. 14 6
634 146.46 atmosphere 1015.0 10 < th dose independent rect. 16 18
639 146.51 radiation 40.0 270 < th dose independent rect. 2 7
652 146.55 atmosphere 1000.0 10 > th dose independent rect. 10 6
656 146.58 wind 1.0 10 > th dose independent rect. 10 8
657 146.59 humidity 50.0 270 > th dose independent rect. 3 16
678 146.66 radiation 1.0 270 > th dose independent rect. 16 15
690 146.72 wind 1.0 270 > th dose independent rect. 9 17
709 146.78 precipitation 0.1 10 < th dose independent rect. 16 7
711 146.78 precipitation 0.1 10 < th dose dependent rect. 16 7
717 146.82 radiation 30.0 10 < th dose independent rect. 16 7
721 146.85 temperature 10.0 10 > th dose independent rect. 16 7
723 146.85 atmosphere 1010.0 10 < th dose independent rect. 16 7
726 146.85 temperature 10.0 10 > th dose independent rect. 23 17
733 146.88 temperature 10.0 270 > th dose dependent rect. 8 7
774 146.93 humidity 50.0 270 > th dose dependent rect. 20 7
776 146.94 temperature 30.0 270 < th dose independent rect. 20 18
788 147.01 radiation 40.0 270 < th dose dependent rect. 15 4
838 147.18 atmosphere 1015.0 270 < th dose dependent rect. 3 5
878 147.39 radiation 10.0 270 < th dose dependent rect. 4 15
883 147.41 atmosphere 995.0 10 > th dose dependent rect. 16 7
913 147.51 atmosphere 995.0 270 > th dose independent rect. 10 15
914 147.51 wind 1.0 270 > th dose dependent rect. 15 5
918 147.55 wind 9.0 270 < th dose dependent rect. 8 19
920 147.57 radiation 10.0 10 < th dose dependent rect. 6 17
926 147.60 atmosphere 1015.0 270 < th dose dependent rect. 2 7
930 147.62 atmosphere 995.0 10 > th dose independent rect. 16 18
936 147.63 radiation 1.0 270 > th dose independent rect. 15 17
949 147.70 atmosphere 995.0 270 > th dose independent rect. 9 17
953 147.71 wind 9.0 90 < th dose independent rect. 19 23
961 147.75 temperature 10.0 1440 > th dose independent rect. 17 7
964 147.75 radiation 30.0 1440 < th dose independent rect. 17 7
970 147.75 temperature 10.0 1440 > th dose independent rect. 24 17