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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os04g0531600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.89 (0.0479) R2 : 0.347
β1 : 2.51 (0.175) R2dD : 0.305 R2D : 0.311
β2 : 0.571 (0.118) R2dC : 0.0337 R2C : 0.0339
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0824 (0.102) R2dN8 : 0.00125 R2N8 : 0.00737
σ : 0.899
deviance : 368.56
__
_____
C
peak time of C : 21.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = wind, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
349.79 0.879 3.87 2.27 0.856 -1.26 1.26 -2.21 -0.0721 20.8 5.3 661 -- --
351.38 0.873 3.9 2.34 0.866 -0.9 0.935 -- -0.0621 20.7 4.8 565 -- --
353.75 0.876 3.89 2.21 0.852 -1.27 -- -1.26 -0.1 21.2 5.286 705 -- --
353.82 0.876 3.91 2.33 0.937 -0.898 -- -- -0.0539 20.7 4.4 578 -- --
383.56 0.912 3.87 2.36 -- -1.05 -- -1.63 -0.132 -- 8.014 1079 -- --
363.29 0.894 3.89 2.56 0.571 -- 1.4 -- -0.0797 20.4 -- -- -- --
368.56 0.899 3.89 2.51 0.571 -- -- -- -0.0824 21.2 -- -- -- --
383.37 0.912 3.88 2.33 -- -0.741 -- -- -0.151 -- 8 1259 -- --
477.23 1.02 3.98 -- 1.28 -1.6 -- -- -0.287 20.9 4.364 575 -- --
387.44 0.92 3.88 2.51 -- -- -- -- -0.0852 -- -- -- -- --
534.43 1.08 3.95 -- 0.572 -- -- -- -0.362 21.5 -- -- -- --
439.21 0.976 4.02 -- -- -1.74 -- -- -0.741 -- 7.433 47520 -- --
553.7 1.1 3.94 -- -- -- -- -- -0.364 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 340.82 temperature 20.0 270 < th dose dependent rect. 1 3
5 342.34 temperature 20.0 270 < th dose independent rect. 11 17
10 342.74 humidity 60.0 270 > th dose independent rect. 9 4
12 342.90 temperature 20.0 10 < th dose dependent rect. 24 7
13 342.93 humidity 90.0 90 < th dose independent rect. 3 2
18 343.30 temperature 20.0 270 < th dose independent rect. 23 5
20 343.39 temperature 20.0 90 < th dose independent rect. 8 1
22 343.41 temperature 20.0 720 > th dose independent rect. 13 11
43 344.05 humidity 90.0 90 < th dose dependent rect. 3 2
57 344.32 wind 9.0 270 < th dose dependent rect. 14 19
62 344.44 humidity 80.0 90 < th dose independent rect. 24 5
64 344.46 humidity 60.0 270 > th dose independent rect. 22 15
66 344.48 temperature 20.0 270 < th dose independent rect. 21 7
67 344.55 wind 5.0 720 < th dose independent rect. 5 11
68 344.56 humidity 80.0 90 < th dose dependent rect. 24 6
70 344.59 wind 5.0 720 < th dose independent rect. 4 13
76 344.68 temperature 20.0 270 < th dose independent rect. 1 1
101 345.06 humidity 80.0 270 < th dose dependent rect. 6 1
110 345.17 wind 1.0 30 > th dose dependent rect. 10 4
111 345.19 wind 3.0 30 > th dose independent rect. 10 4
114 345.19 temperature 30.0 270 < th dose dependent rect. 11 17
117 345.23 wind 7.0 720 < th dose independent rect. 3 22
131 345.44 wind 5.0 270 < th dose independent rect. 13 20
136 345.49 temperature 30.0 270 < th dose dependent rect. 13 15
141 345.53 wind 7.0 720 < th dose independent rect. 13 12
143 345.53 temperature 20.0 270 < th dose dependent rect. 10 18
147 345.57 wind 5.0 720 > th dose independent rect. 11 1
152 345.62 wind 1.0 10 > th dose dependent rect. 10 6
160 345.73 temperature 30.0 270 < th dose dependent rect. 21 7
170 345.81 humidity 90.0 90 < th dose independent rect. 10 20
173 345.84 humidity 80.0 270 < th dose independent rect. 6 1
183 345.91 temperature 20.0 270 > th dose independent rect. 14 17
204 346.08 wind 5.0 720 < th dose independent rect. 5 18
212 346.14 temperature 20.0 270 < th dose dependent rect. 21 7
220 346.22 humidity 90.0 90 < th dose independent rect. 10 13
256 346.46 temperature 30.0 270 < th dose dependent rect. 19 9
274 346.63 temperature 20.0 270 > th dose independent sin 16 NA
288 346.69 wind 3.0 30 > th dose independent rect. 10 6
292 346.74 temperature 10.0 43200 > th dose independent rect. 10 8
296 346.78 temperature 20.0 270 < th dose independent sin 15 NA
306 346.86 wind 5.0 720 < th dose independent sin 1 NA
345 347.06 wind 5.0 720 < th dose independent rect. 21 19
373 347.21 humidity 90.0 90 < th dose independent rect. 10 17
377 347.22 wind 7.0 720 < th dose independent rect. 14 10
384 347.27 temperature 20.0 720 < th dose independent rect. 19 2
390 347.28 wind 5.0 720 < th dose independent rect. 11 14
394 347.31 temperature 20.0 270 > th dose independent rect. 7 7
396 347.31 temperature 20.0 720 < th dose independent rect. 9 13
404 347.36 temperature 20.0 720 < th dose independent rect. 18 4
413 347.39 humidity 90.0 10 < th dose independent rect. 10 14
415 347.42 wind 5.0 720 < th dose independent rect. 11 5
421 347.46 temperature 10.0 43200 > th dose independent rect. 10 5
438 347.56 wind 3.0 720 > th dose dependent rect. 11 1
444 347.60 humidity 60.0 720 > th dose independent rect. 1 12
464 347.70 temperature 20.0 720 < th dose independent rect. 15 7
485 347.79 temperature 20.0 10 < th dose dependent rect. 24 22
513 347.85 wind 5.0 720 < th dose independent rect. 23 17
514 347.85 wind 9.0 270 < th dose dependent rect. 4 15
519 347.88 temperature 20.0 720 > th dose independent rect. 19 5
530 347.92 wind 1.0 4320 < th dose dependent rect. 5 2
552 348.02 humidity 90.0 10 < th dose independent rect. 10 17
574 348.09 temperature 30.0 30 < th dose independent rect. 16 18
578 348.11 temperature 20.0 270 > th dose independent rect. 9 4
588 348.13 wind 1.0 4320 > th dose independent rect. 6 1
611 348.18 wind 5.0 10 < th dose independent rect. 6 14
627 348.21 temperature 25.0 720 < th dose dependent rect. 18 1
635 348.23 wind 1.0 4320 < th dose independent rect. 6 1
647 348.26 humidity 60.0 90 > th dose independent rect. 1 13
655 348.28 temperature 20.0 720 > th dose independent sin 19 NA
657 348.28 wind 5.0 720 < th dose independent rect. 13 2
665 348.30 temperature 20.0 270 < th dose dependent sin 14 NA
667 348.31 temperature 30.0 10 < th dose independent rect. 14 20
690 348.39 wind 9.0 720 < th dose dependent rect. 5 11
702 348.43 humidity 50.0 270 > th dose dependent rect. 9 4
713 348.47 radiation 40.0 4320 < th dose independent rect. 16 10
725 348.50 humidity 50.0 30 > th dose dependent rect. 16 18
799 348.74 radiation 30.0 43200 > th dose dependent rect. 16 1
823 348.78 wind 5.0 10 < th dose independent rect. 6 16
864 348.88 radiation 1.0 270 > th dose independent rect. 9 4
879 348.91 wind 5.0 720 > th dose independent rect. 1 21
889 348.95 wind 1.0 270 > th dose independent rect. 24 13
906 349.01 precipitation 0.1 270 < th dose independent rect. 22 15
907 349.01 precipitation 0.1 270 < th dose dependent rect. 22 15
939 349.12 precipitation 0.1 270 < th dose independent rect. 9 4
945 349.12 precipitation 0.1 270 < th dose dependent rect. 9 4
947 349.12 temperature 30.0 10 < th dose dependent rect. 20 10
950 349.13 humidity 90.0 10 < th dose independent rect. 10 4
955 349.14 temperature 25.0 720 < th dose dependent rect. 18 3
961 349.15 atmosphere 995.0 270 > th dose independent rect. 9 4
962 349.15 atmosphere 1015.0 270 < th dose independent rect. 9 4
969 349.16 humidity 50.0 270 > th dose independent rect. 9 19
977 349.20 temperature 20.0 720 < th dose independent rect. 21 1
984 349.21 temperature 20.0 720 > th dose independent rect. 21 2
990 349.21 temperature 10.0 270 > th dose dependent rect. 3 21