Os04g0530700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta-D-xylosidase.
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Os04g0530700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta-D-xylosidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 72.24 | 0.399 | 8.81 | 0.361 | 0.0979 | 0.226 | -0.961 | -9.57 | -0.0303 | 20.2 | 30 | 668 | -- | -- |
| 78.5 | 0.413 | 8.88 | -0.619 | 0.309 | -0.542 | -0.584 | -- | -0.0878 | 19.2 | 32.04 | 5786 | -- | -- |
| 74.82 | 0.403 | 8.81 | 0.327 | 0.107 | 0.19 | -- | -8.64 | -0.038 | 21.1 | 30 | 672 | -- | -- |
| 77.86 | 0.411 | 8.91 | -0.605 | 0.343 | -0.553 | -- | -- | -0.06 | 19 | 31.9 | 5786 | -- | -- |
| 75.41 | 0.404 | 8.82 | 0.253 | -- | 0.0671 | -- | -8.16 | -0.0223 | -- | 30.01 | 667 | -- | -- |
| 90.43 | 0.446 | 8.94 | -0.43 | 0.293 | -- | -0.241 | -- | -0.153 | 19.9 | -- | -- | -- | -- |
| 90.6 | 0.446 | 8.94 | -0.423 | 0.294 | -- | -- | -- | -0.153 | 19.8 | -- | -- | -- | -- |
| 81.99 | 0.422 | 8.92 | -0.579 | -- | -0.569 | -- | -- | -0.127 | -- | 31.6 | 6218 | -- | -- |
| 86.07 | 0.432 | 8.9 | -- | 0.351 | -0.493 | -- | -- | -0.0598 | 19.2 | 31.8 | 5995 | -- | -- |
| 95.28 | 0.456 | 8.93 | -0.426 | -- | -- | -- | -- | -0.157 | -- | -- | -- | -- | -- |
| 95.31 | 0.457 | 8.93 | -- | 0.297 | -- | -- | -- | -0.106 | 19.7 | -- | -- | -- | -- |
| 90.29 | 0.443 | 8.91 | -- | -- | -0.47 | -- | -- | -0.0653 | -- | 31.61 | 6218 | -- | -- |
| 100.07 | 0.467 | 8.92 | -- | -- | -- | -- | -- | -0.11 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 70.43 | temperature | 10 | 270 | > th | dose dependent | rect. | 4 | 16 |
| 3 | 70.90 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 16 |
| 6 | 71.66 | temperature | 30 | 720 | < th | dose independent | rect. | 1 | 23 |
| 8 | 71.72 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 16 |
| 11 | 71.99 | temperature | 30 | 720 | < th | dose independent | rect. | 17 | 22 |
| 12 | 72.09 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 22 |
| 14 | 72.18 | temperature | 30 | 720 | > th | dose independent | rect. | 9 | 8 |
| 27 | 72.22 | temperature | 30 | 720 | < th | dose independent | rect. | 19 | 20 |
| 31 | 72.25 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 17 |
| 32 | 72.25 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 22 |
| 33 | 72.26 | temperature | 30 | 720 | > th | dose independent | sin | 0 | NA |
| 54 | 72.31 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 14 |
| 57 | 72.35 | temperature | 30 | 270 | < th | dose independent | rect. | 9 | 18 |
| 62 | 72.40 | temperature | 30 | 720 | < th | dose independent | rect. | 12 | 23 |
| 64 | 72.42 | temperature | 30 | 720 | < th | dose independent | sin | 23 | NA |
| 68 | 72.46 | temperature | 30 | 720 | < th | dose independent | rect. | 8 | 23 |
| 75 | 72.56 | temperature | 30 | 720 | < th | dose independent | no | NA | NA |
| 77 | 72.57 | temperature | 30 | 720 | > th | dose independent | no | NA | NA |
| 183 | 72.61 | temperature | 30 | 720 | > th | dose independent | rect. | 13 | 23 |
| 189 | 72.68 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 4 |
| 190 | 72.69 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 18 |
| 191 | 72.69 | temperature | 30 | 720 | > th | dose independent | rect. | 11 | 23 |
| 192 | 72.70 | temperature | 30 | 720 | > th | dose independent | rect. | 16 | 23 |
| 233 | 72.89 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 8 |
| 237 | 72.92 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 12 |
| 268 | 72.97 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 21 |
| 278 | 73.11 | humidity | 60 | 4320 | > th | dose independent | rect. | 13 | 1 |
| 295 | 73.24 | temperature | 25 | 270 | > th | dose dependent | rect. | 16 | 16 |
| 329 | 73.41 | temperature | 25 | 90 | > th | dose dependent | rect. | 17 | 11 |
| 336 | 73.47 | temperature | 30 | 720 | < th | dose independent | rect. | 5 | 10 |
| 340 | 73.48 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 23 |
| 350 | 73.54 | humidity | 70 | 1440 | < th | dose independent | rect. | 16 | 1 |
| 378 | 73.81 | humidity | 60 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 398 | 73.94 | temperature | 30 | 720 | < th | dose independent | rect. | 23 | 23 |
| 400 | 73.96 | temperature | 30 | 720 | < th | dose independent | rect. | 6 | 23 |
| 402 | 73.97 | temperature | 30 | 720 | < th | dose independent | rect. | 21 | 20 |
| 409 | 74.05 | temperature | 15 | 270 | > th | dose dependent | rect. | 2 | 7 |
| 473 | 74.45 | temperature | 25 | 270 | > th | dose dependent | sin | 12 | NA |
| 487 | 74.53 | temperature | 30 | 720 | < th | dose independent | rect. | 9 | 12 |
| 501 | 74.61 | temperature | 30 | 720 | < th | dose independent | rect. | 11 | 4 |
| 567 | 75.00 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 1 |
| 568 | 75.00 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 17 |
| 581 | 75.08 | humidity | 70 | 270 | < th | dose independent | rect. | 16 | 3 |
| 626 | 75.27 | humidity | 60 | 720 | < th | dose independent | rect. | 13 | 2 |
| 627 | 75.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 7 |
| 629 | 75.27 | humidity | 60 | 14400 | > th | dose independent | rect. | 12 | 16 |
| 653 | 75.33 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 15 |
| 658 | 75.34 | humidity | 60 | 14400 | < th | dose dependent | rect. | 16 | 4 |
| 671 | 75.37 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 16 |
| 676 | 75.38 | humidity | 60 | 14400 | < th | dose independent | rect. | 12 | 7 |
| 678 | 75.38 | temperature | 30 | 720 | > th | dose dependent | rect. | 9 | 8 |
| 694 | 75.39 | humidity | 60 | 14400 | < th | dose independent | rect. | 16 | 4 |
| 724 | 75.41 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 16 | 3 |
| 759 | 75.51 | humidity | 60 | 720 | > th | dose independent | rect. | 11 | 6 |
| 784 | 75.53 | humidity | 80 | 270 | < th | dose dependent | rect. | 16 | 7 |
| 794 | 75.55 | temperature | 30 | 720 | > th | dose dependent | sin | 1 | NA |
| 800 | 75.57 | atmosphere | 1005 | 270 | < th | dose independent | rect. | 17 | 1 |
| 804 | 75.58 | temperature | 30 | 270 | > th | dose independent | sin | 11 | NA |
| 808 | 75.59 | humidity | 50 | 270 | > th | dose dependent | rect. | 8 | 19 |
| 835 | 75.67 | temperature | 30 | 720 | < th | dose independent | rect. | 3 | 8 |
| 840 | 75.68 | humidity | 70 | 1440 | > th | dose independent | rect. | 16 | 2 |
| 864 | 75.72 | temperature | 30 | 270 | < th | dose independent | sin | 11 | NA |
| 865 | 75.72 | humidity | 60 | 14400 | > th | dose independent | sin | 16 | NA |
| 870 | 75.73 | radiation | 30 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 905 | 75.79 | temperature | 30 | 720 | > th | dose dependent | rect. | 13 | 2 |
| 959 | 75.83 | temperature | 30 | 720 | > th | dose dependent | no | NA | NA |