Os04g0530200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0530200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.34 | 0.333 | 13.5 | -1 | 0.248 | 0.467 | -0.313 | 1.84 | -0.103 | 14.7 | 25.6 | 752 | -- | -- |
| 52.96 | 0.342 | 13.4 | -0.655 | 0.448 | 0.59 | 0.0929 | -- | -0.0237 | 13.8 | 56.93 | 68 | -- | -- |
| 50.41 | 0.331 | 13.5 | -0.981 | 0.327 | 0.469 | -- | 1.7 | -0.084 | 14.6 | 26.2 | 485 | -- | -- |
| 52.99 | 0.341 | 13.4 | -0.652 | 0.448 | 0.587 | -- | -- | -0.0234 | 13.8 | 56.93 | 68 | -- | -- |
| 54.01 | 0.342 | 13.5 | -0.982 | -- | 0.551 | -- | 1.8 | -0.0895 | -- | 25.8 | 854 | -- | -- |
| 56.3 | 0.352 | 13.5 | -0.768 | 0.281 | -- | 0.0622 | -- | -0.106 | 13.4 | -- | -- | -- | -- |
| 56.31 | 0.351 | 13.5 | -0.766 | 0.282 | -- | -- | -- | -0.106 | 13.5 | -- | -- | -- | -- |
| 58.23 | 0.355 | 13.4 | -0.652 | -- | 0.429 | -- | -- | -0.0166 | -- | 26.6 | 936 | -- | -- |
| 63.07 | 0.37 | 13.4 | -- | 0.539 | 0.895 | -- | -- | 0.0849 | 14.2 | 69.2 | 63 | -- | -- |
| 61.18 | 0.365 | 13.5 | -0.777 | -- | -- | -- | -- | -0.112 | -- | -- | -- | -- | -- |
| 71.76 | 0.396 | 13.4 | -- | 0.296 | -- | -- | -- | -0.0206 | 13.6 | -- | -- | -- | -- |
| 62.08 | 0.367 | 13.4 | -- | -- | 0.623 | -- | -- | 0.161 | -- | 36.82 | 47520 | -- | -- |
| 77.11 | 0.41 | 13.4 | -- | -- | -- | -- | -- | -0.0258 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.93 | temperature | 30 | 90 | < th | dose dependent | sin | 5 | NA |
| 4 | 46.35 | temperature | 10 | 90 | > th | dose dependent | sin | 6 | NA |
| 15 | 46.83 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 17 |
| 23 | 46.95 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 18 |
| 33 | 47.21 | temperature | 20 | 90 | > th | dose dependent | rect. | 19 | 19 |
| 39 | 47.31 | temperature | 15 | 270 | > th | dose dependent | rect. | 21 | 14 |
| 46 | 47.40 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 14 |
| 48 | 47.41 | temperature | 30 | 90 | < th | dose dependent | rect. | 23 | 16 |
| 50 | 47.42 | temperature | 20 | 10 | > th | dose dependent | rect. | 20 | 18 |
| 92 | 47.76 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 115 | 47.92 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 17 |
| 116 | 47.92 | temperature | 25 | 270 | < th | dose independent | rect. | 22 | 19 |
| 137 | 48.04 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 12 |
| 149 | 48.11 | temperature | 20 | 10 | > th | dose dependent | rect. | 2 | 12 |
| 160 | 48.15 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 17 |
| 165 | 48.19 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 175 | 48.23 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 186 | 48.28 | temperature | 25 | 90 | < th | dose independent | sin | 5 | NA |
| 192 | 48.29 | temperature | 25 | 270 | < th | dose independent | sin | 7 | NA |
| 220 | 48.37 | temperature | 20 | 270 | > th | dose dependent | rect. | 6 | 5 |
| 253 | 48.54 | temperature | 20 | 270 | > th | dose dependent | rect. | 5 | 7 |
| 256 | 48.54 | temperature | 30 | 90 | < th | dose dependent | rect. | 1 | 14 |
| 279 | 48.61 | temperature | 25 | 270 | > th | dose independent | rect. | 23 | 13 |
| 307 | 48.68 | temperature | 25 | 720 | > th | dose independent | rect. | 9 | 2 |
| 313 | 48.70 | temperature | 25 | 720 | < th | dose independent | rect. | 5 | 6 |
| 318 | 48.71 | temperature | 25 | 270 | > th | dose independent | rect. | 7 | 4 |
| 366 | 48.81 | temperature | 25 | 10 | > th | dose dependent | rect. | 6 | 8 |
| 378 | 48.83 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 17 |
| 413 | 48.89 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 9 |
| 423 | 48.90 | temperature | 25 | 270 | > th | dose independent | rect. | 16 | 21 |
| 470 | 48.98 | temperature | 10 | 270 | > th | dose dependent | rect. | 6 | 19 |
| 499 | 49.04 | temperature | 25 | 270 | < th | dose independent | rect. | 1 | 14 |
| 503 | 49.04 | temperature | 10 | 270 | > th | dose dependent | rect. | 7 | 15 |
| 512 | 49.06 | radiation | 40 | 90 | < th | dose independent | rect. | 4 | 14 |
| 648 | 49.23 | temperature | 20 | 270 | > th | dose independent | rect. | 6 | 21 |
| 713 | 49.30 | temperature | 25 | 90 | < th | dose independent | rect. | 3 | 15 |
| 723 | 49.31 | temperature | 25 | 10 | > th | dose independent | rect. | 8 | 6 |
| 743 | 49.33 | temperature | 25 | 270 | > th | dose independent | sin | 6 | NA |
| 861 | 49.46 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 19 |