Os04g0529100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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Os04g0529100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Pathogenesis-related transcriptional factor and ERF domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = rect.)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 241.05 | 0.729 | 7.57 | 1.7 | 2.76 | 2.3 | -0.615 | -1.19 | -0.149 | 12.5 | 31.28 | 70 | 4.14 | 7.77 |
| 243.33 | 0.727 | 7.59 | 1.67 | 2.76 | 2.38 | -0.723 | -- | -0.144 | 12.6 | 31.66 | 64 | 4.12 | 7.77 |
| 241.61 | 0.724 | 7.59 | 1.68 | 2.78 | 2.28 | -- | -1.29 | -0.147 | 12.6 | 30.99 | 65 | 4.13 | 7.68 |
| 247.23 | 0.732 | 7.58 | 1.63 | 2.78 | 2.26 | -- | -- | -0.147 | 12.7 | 31.49 | 62 | 4.16 | 7.67 |
| 305.95 | 0.815 | 7.61 | 2.12 | -- | 3.75 | -- | -1.07 | 0.00183 | -- | 63.03 | 682 | 3.03 | 6.08 |
| 307.73 | 0.822 | 7.59 | 1.42 | 3.44 | -- | -1.61 | -- | -0.336 | 11.4 | -- | -- | -- | -- |
| 318.91 | 0.836 | 7.59 | 1.35 | 3.45 | -- | -- | -- | -0.342 | 11.4 | -- | -- | -- | -- |
| 304.55 | 0.813 | 7.61 | 1.65 | -- | 4.07 | -- | -- | -0.118 | -- | 50.02 | 673 | 2.65 | 6.53 |
| 310.02 | 0.82 | 7.65 | -- | 2.76 | 2.06 | -- | -- | -0.405 | 12.7 | 34.14 | 56 | 4.18 | 7.58 |
| 1063.71 | 1.52 | 7.67 | 1.26 | -- | -- | -- | -- | -0.378 | -- | -- | -- | -- | -- |
| 367.05 | 0.896 | 7.62 | -- | 3.43 | -- | -- | -- | -0.493 | 11.4 | -- | -- | -- | -- |
| 349.67 | 0.871 | 7.7 | -- | -- | 3.36 | -- | -- | -0.484 | -- | 87.48 | 756 | 2.78 | 4.87 |
| 1105.6 | 1.55 | 7.7 | -- | -- | -- | -- | -- | -0.518 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 244.85 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 4 | 8 |
| 5 | 250.26 | temperature | 25.0 | 10 | < th | dose independent | rect. | 13 | 16 |
| 9 | 252.03 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 12 | 16 |
| 22 | 255.41 | radiation | 10.0 | 90 | < th | dose dependent | rect. | 7 | 21 |
| 28 | 255.85 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 33 | 256.60 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 6 | 23 |
| 85 | 261.75 | humidity | 60.0 | 90 | > th | dose independent | rect. | 12 | 16 |
| 86 | 261.83 | radiation | 10.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 98 | 262.66 | radiation | 20.0 | 90 | < th | dose independent | rect. | 12 | 16 |
| 103 | 262.88 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 12 | 16 |
| 104 | 262.89 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 21 |
| 105 | 262.89 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 113 | 263.54 | wind | 9.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 114 | 263.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 117 | 263.54 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 121 | 263.54 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 130 | 263.54 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 2 | 3 |
| 131 | 263.54 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 143 | 263.54 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 21 |
| 149 | 263.58 | temperature | 25.0 | 10 | < th | dose independent | rect. | 24 | 5 |
| 152 | 263.75 | radiation | 30.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 162 | 264.23 | humidity | 60.0 | 90 | > th | dose independent | rect. | 15 | 13 |
| 172 | 264.70 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 4 | 1 |
| 175 | 264.79 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 7 |
| 176 | 264.86 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 1 | 3 |
| 177 | 264.86 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 180 | 264.91 | wind | 7.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 182 | 264.91 | temperature | 10.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 184 | 264.91 | temperature | 30.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 185 | 264.91 | humidity | 50.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 188 | 264.91 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 189 | 264.91 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 191 | 264.91 | radiation | 1.0 | 90 | < th | dose independent | rect. | 1 | 3 |
| 196 | 264.91 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 21 |
| 197 | 264.91 | radiation | 1.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 202 | 264.96 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 211 | 265.40 | radiation | 10.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 220 | 265.67 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 17 |
| 229 | 266.04 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 21 |
| 234 | 266.17 | temperature | 25.0 | 90 | < th | dose independent | rect. | 23 | 5 |
| 236 | 266.18 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 240 | 266.28 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 12 |
| 266 | 266.45 | wind | 9.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 270 | 266.55 | temperature | 30.0 | 10 | < th | dose dependent | rect. | 13 | 16 |
| 281 | 266.81 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 13 |
| 298 | 267.17 | temperature | 25.0 | 90 | < th | dose independent | rect. | 4 | 8 |
| 299 | 267.17 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 23 | 14 |
| 329 | 267.73 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 1 | 3 |
| 330 | 267.74 | temperature | 25.0 | 90 | < th | dose independent | rect. | 19 | 9 |
| 354 | 268.36 | wind | 9.0 | 90 | < th | dose dependent | rect. | 4 | 21 |
| 359 | 268.42 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 13 | 15 |
| 376 | 268.87 | temperature | 15.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 380 | 269.00 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 399 | 269.33 | temperature | 15.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 407 | 269.55 | radiation | 40.0 | 1440 | < th | dose dependent | rect. | 2 | 3 |
| 415 | 269.69 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 23 | 5 |
| 439 | 269.74 | radiation | 1.0 | 10 | < th | dose independent | rect. | 1 | 17 |
| 452 | 269.99 | atmosphere | 995.0 | 30 | > th | dose dependent | rect. | 1 | 3 |
| 459 | 270.16 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 462 | 270.22 | wind | 7.0 | 1440 | < th | dose independent | rect. | 5 | 3 |
| 463 | 270.24 | wind | 1.0 | 90 | > th | dose independent | rect. | 1 | 3 |
| 465 | 270.27 | radiation | 1.0 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 475 | 270.27 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 1 | 3 |
| 478 | 270.33 | radiation | 20.0 | 720 | < th | dose independent | rect. | 16 | 1 |
| 479 | 270.36 | radiation | 40.0 | 720 | < th | dose dependent | rect. | 16 | 1 |
| 498 | 270.73 | radiation | 1.0 | 10 | < th | dose independent | rect. | 19 | 23 |
| 574 | 271.36 | temperature | 25.0 | 90 | < th | dose independent | rect. | 21 | 7 |
| 585 | 271.64 | radiation | 20.0 | 90 | < th | dose independent | rect. | 15 | 13 |
| 592 | 271.73 | atmosphere | 1000.0 | 90 | > th | dose independent | rect. | 12 | 16 |
| 595 | 271.76 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 1 | 22 |
| 597 | 271.76 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 601 | 271.83 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 603 | 271.86 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 621 | 272.04 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 8 |
| 654 | 272.53 | wind | 3.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 657 | 272.57 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 2 | 3 |
| 667 | 272.69 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 23 | 2 |
| 676 | 272.81 | humidity | 60.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 681 | 272.85 | radiation | 1.0 | 10 | > th | dose independent | rect. | 11 | 23 |
| 684 | 272.89 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 8 | 20 |
| 686 | 272.92 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 21 |
| 705 | 273.23 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 13 |
| 718 | 273.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 734 | 273.30 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 737 | 273.30 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 738 | 273.30 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 754 | 273.30 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 821 | 273.69 | temperature | 10.0 | 270 | > th | dose independent | rect. | 2 | 21 |
| 829 | 273.71 | radiation | 1.0 | 10 | < th | dose dependent | sin | 9 | NA |
| 832 | 273.73 | wind | 7.0 | 90 | < th | dose dependent | rect. | 4 | 5 |
| 837 | 273.77 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 13 |
| 839 | 273.79 | temperature | 20.0 | 720 | < th | dose independent | rect. | 5 | 1 |
| 846 | 273.87 | temperature | 25.0 | 10 | < th | dose independent | rect. | 5 | 7 |
| 853 | 273.93 | wind | 9.0 | 270 | < th | dose independent | rect. | 2 | 21 |
| 858 | 274.00 | temperature | 25.0 | 270 | < th | dose independent | rect. | 24 | 1 |
| 861 | 274.04 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 11 |
| 864 | 274.06 | atmosphere | 1010.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 875 | 274.17 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 887 | 274.25 | atmosphere | 1010.0 | 30 | < th | dose independent | rect. | 10 | 18 |
| 893 | 274.27 | wind | 5.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 928 | 274.41 | radiation | 20.0 | 720 | < th | dose independent | rect. | 15 | 3 |
| 946 | 274.51 | temperature | 20.0 | 270 | > th | dose dependent | sin | 5 | NA |
| 952 | 274.59 | radiation | 40.0 | 43200 | < th | dose independent | rect. | 16 | 10 |
| 958 | 274.64 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 7 |
| 972 | 274.75 | radiation | 1.0 | 10 | < th | dose independent | rect. | 23 | 23 |
| 974 | 274.75 | radiation | 1.0 | 10 | < th | dose dependent | rect. | 1 | 7 |
| 993 | 274.90 | radiation | 1.0 | 14400 | < th | dose independent | rect. | 18 | 8 |