Os04g0528300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ABC transporter.
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Os04g0528300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ABC transporter.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49.58 | 0.331 | 11.1 | -1.59 | 0.838 | 0.795 | 0.192 | -1.16 | -0.152 | 5.46 | 10.01 | 1430 | -- | -- |
| 50.63 | 0.331 | 11 | -1.52 | 0.843 | 0.806 | 0.125 | -- | -0.178 | 5.46 | 8.918 | 8588 | -- | -- |
| 49.67 | 0.328 | 11.1 | -1.58 | 0.839 | 0.795 | -- | -1.12 | -0.151 | 5.49 | 9.607 | 1431 | -- | -- |
| 50.31 | 0.33 | 11 | -1.32 | 0.916 | 0.857 | -- | -- | -0.0689 | 6.04 | 12.75 | 929 | -- | -- |
| 84.91 | 0.429 | 11.1 | -1.5 | -- | 0.931 | -- | -0.816 | -0.162 | -- | 7.797 | 1287 | -- | -- |
| 61.23 | 0.367 | 11 | -1.09 | 0.869 | -- | 0.163 | -- | 0.0597 | 5.36 | -- | -- | -- | -- |
| 61.3 | 0.367 | 11 | -1.09 | 0.87 | -- | -- | -- | 0.059 | 5.39 | -- | -- | -- | -- |
| 85.45 | 0.431 | 11 | -1.34 | -- | 0.946 | -- | -- | -0.0906 | -- | 6.106 | 1276 | -- | -- |
| 90.68 | 0.444 | 11 | -- | 0.824 | 0.267 | -- | -- | 0.128 | 5.57 | 22.1 | 1274 | -- | -- |
| 100.72 | 0.469 | 11 | -1.06 | -- | -- | -- | -- | 0.0805 | -- | -- | -- | -- | -- |
| 92.42 | 0.45 | 11 | -- | 0.852 | -- | -- | -- | 0.18 | 5.44 | -- | -- | -- | -- |
| 126.14 | 0.523 | 11 | -- | -- | 0.327 | -- | -- | 0.139 | -- | 22.2 | 1273 | -- | -- |
| 130.2 | 0.533 | 11 | -- | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 45.10 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 19 |
| 5 | 45.76 | temperature | 15 | 720 | > th | dose dependent | rect. | 19 | 13 |
| 7 | 45.89 | temperature | 10 | 270 | > th | dose dependent | rect. | 2 | 20 |
| 59 | 47.27 | temperature | 15 | 720 | > th | dose dependent | sin | 10 | NA |
| 63 | 47.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 3 |
| 75 | 47.41 | humidity | 90 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 95 | 47.70 | temperature | 15 | 10 | > th | dose dependent | rect. | 11 | 23 |
| 106 | 47.79 | temperature | 15 | 270 | > th | dose dependent | rect. | 11 | 22 |
| 123 | 47.94 | temperature | 10 | 720 | > th | dose dependent | rect. | 11 | 20 |
| 124 | 47.95 | temperature | 30 | 30 | < th | dose dependent | rect. | 7 | 23 |
| 128 | 47.98 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 169 | 48.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 19 |
| 211 | 48.51 | temperature | 30 | 10 | < th | dose dependent | rect. | 9 | 21 |
| 229 | 48.58 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 2 |
| 235 | 48.61 | temperature | 30 | 90 | < th | dose independent | rect. | 9 | 19 |
| 241 | 48.63 | atmosphere | 1005 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 244 | 48.64 | atmosphere | 995 | 90 | > th | dose dependent | rect. | 9 | 19 |
| 258 | 48.71 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 16 |
| 276 | 48.77 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 278 | 48.78 | humidity | 90 | 14400 | > th | dose dependent | sin | 15 | NA |
| 288 | 48.80 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 14 |
| 300 | 48.84 | temperature | 20 | 270 | > th | dose dependent | rect. | 2 | 6 |
| 321 | 48.91 | temperature | 10 | 720 | > th | dose dependent | rect. | 2 | 5 |
| 348 | 49.00 | temperature | 15 | 30 | > th | dose dependent | rect. | 4 | 21 |
| 437 | 49.27 | temperature | 20 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 442 | 49.27 | temperature | 20 | 90 | > th | dose dependent | rect. | 13 | 20 |
| 448 | 49.28 | temperature | 20 | 10 | > th | dose dependent | rect. | 13 | 21 |
| 466 | 49.32 | temperature | 30 | 720 | < th | dose dependent | rect. | 15 | 19 |
| 471 | 49.33 | temperature | 20 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 474 | 49.34 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 475 | 49.34 | temperature | 15 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 543 | 49.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 550 | 49.47 | temperature | 30 | 270 | < th | dose independent | rect. | 7 | 20 |
| 577 | 49.49 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 7 |
| 617 | 49.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 1 |
| 637 | 49.52 | humidity | 90 | 14400 | < th | dose independent | sin | 15 | NA |
| 747 | 49.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 818 | 49.58 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 821 | 49.58 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 3 |
| 822 | 49.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 10 |
| 855 | 49.59 | temperature | 10 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 906 | 49.59 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 907 | 49.60 | temperature | 30 | 720 | < th | dose independent | rect. | 7 | 4 |
| 997 | 49.62 | temperature | 10 | 1440 | > th | dose dependent | rect. | 6 | 1 |
| 999 | 49.62 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 1 |