Os04g0528100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os04g0528100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 51.31 | 0.337 | 11.8 | -0.182 | 0.868 | -0.695 | -0.182 | 0.553 | -0.525 | 16.7 | 90 | 270 | -- | -- |
| 51.68 | 0.335 | 11.8 | -0.157 | 0.845 | -0.702 | -0.455 | -- | -0.52 | 16.7 | 89.85 | 264 | -- | -- |
| 51.36 | 0.334 | 11.8 | -0.187 | 0.87 | -0.689 | -- | 0.669 | -0.524 | 16.7 | 90.03 | 264 | -- | -- |
| 52.18 | 0.336 | 11.8 | -0.166 | 0.861 | -0.647 | -- | -- | -0.517 | 16.7 | 89.56 | 265 | -- | -- |
| 74.91 | 0.403 | 11.8 | -0.107 | -- | -1.26 | -- | 0.392 | -0.619 | -- | 87.51 | 260 | -- | -- |
| 60.05 | 0.363 | 11.8 | -0.236 | 1.16 | -- | -0.103 | -- | -0.414 | 16.8 | -- | -- | -- | -- |
| 60.07 | 0.363 | 11.8 | -0.237 | 1.16 | -- | -- | -- | -0.415 | 16.8 | -- | -- | -- | -- |
| 75.27 | 0.404 | 11.9 | -0.0979 | -- | -1.23 | -- | -- | -0.622 | -- | 87.35 | 258 | -- | -- |
| 52.87 | 0.339 | 11.8 | -- | 0.848 | -0.67 | -- | -- | -0.503 | 16.7 | 89.38 | 271 | -- | -- |
| 131.25 | 0.535 | 11.8 | -0.28 | -- | -- | -- | -- | -0.445 | -- | -- | -- | -- | -- |
| 61.55 | 0.367 | 11.8 | -- | 1.16 | -- | -- | -- | -0.389 | 16.8 | -- | -- | -- | -- |
| 73.83 | 0.4 | 11.8 | -- | -- | -1.07 | -- | -- | -0.515 | -- | 76.31 | 256 | -- | -- |
| 133.32 | 0.539 | 11.8 | -- | -- | -- | -- | -- | -0.414 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 47.90 | wind | 7.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 2 | 47.95 | wind | 7.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 3 | 48.06 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 21 |
| 7 | 48.40 | wind | 9.0 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 10 | 48.74 | temperature | 20.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 14 | 48.93 | humidity | 80.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 19 | 49.07 | wind | 3.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 20 | 49.11 | temperature | 20.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 22 | 49.16 | wind | 9.0 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 23 | 49.17 | wind | 7.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 24 | 49.18 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 25 | 49.19 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 29 | 49.24 | wind | 9.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 30 | 49.24 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 35 | 49.30 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 8 | 21 |
| 36 | 49.30 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 8 | 21 |
| 40 | 49.34 | wind | 7.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 42 | 49.34 | temperature | 10.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 44 | 49.34 | temperature | 30.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 45 | 49.34 | humidity | 50.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 47 | 49.34 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 48 | 49.34 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 49 | 49.34 | temperature | 10.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 50 | 49.36 | humidity | 90.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 51 | 49.36 | atmosphere | 995.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 53 | 49.37 | precipitation | 0.1 | 10 | < th | dose independent | rect. | 5 | 3 |
| 54 | 49.37 | precipitation | 0.1 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 56 | 49.40 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 8 | 20 |
| 57 | 49.40 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 8 | 20 |
| 61 | 49.50 | radiation | 40.0 | 10 | < th | dose independent | rect. | 5 | 3 |
| 64 | 49.52 | temperature | 25.0 | 270 | < th | dose independent | rect. | 3 | 2 |
| 73 | 49.63 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 6 | 21 |
| 74 | 49.63 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 6 | 21 |
| 75 | 49.64 | wind | 9.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 76 | 49.64 | temperature | 10.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 78 | 49.64 | temperature | 30.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 79 | 49.64 | humidity | 50.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 81 | 49.64 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 4 | 4 |
| 82 | 49.64 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 83 | 49.64 | temperature | 10.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 85 | 49.64 | temperature | 10.0 | 90 | > th | dose dependent | rect. | 4 | 4 |
| 86 | 49.65 | precipitation | 0.1 | 90 | < th | dose independent | rect. | 4 | 4 |
| 87 | 49.65 | precipitation | 0.1 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 89 | 49.67 | radiation | 40.0 | 90 | < th | dose independent | rect. | 4 | 4 |
| 92 | 49.71 | humidity | 50.0 | 10 | > th | dose dependent | rect. | 16 | 16 |
| 93 | 49.71 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 21 |
| 94 | 49.72 | atmosphere | 995.0 | 90 | > th | dose independent | rect. | 8 | 20 |
| 101 | 49.76 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 8 |
| 102 | 49.77 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 15 | 17 |
| 116 | 49.90 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 20 |
| 122 | 49.92 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 8 |
| 147 | 50.03 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 16 | 14 |
| 197 | 50.17 | temperature | 30.0 | 90 | < th | dose independent | rect. | 15 | 17 |
| 209 | 50.22 | humidity | 90.0 | 270 | > th | dose independent | rect. | 1 | 10 |
| 229 | 50.26 | temperature | 10.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 239 | 50.30 | humidity | 90.0 | 270 | < th | dose independent | rect. | 23 | 12 |
| 243 | 50.31 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 251 | 50.33 | humidity | 50.0 | 270 | > th | dose independent | rect. | 15 | 15 |
| 260 | 50.36 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 3 |
| 276 | 50.41 | humidity | 70.0 | 10 | > th | dose independent | rect. | 16 | 16 |
| 283 | 50.43 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 306 | 50.51 | wind | 9.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 307 | 50.51 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 311 | 50.53 | radiation | 1.0 | 10 | > th | dose independent | rect. | 5 | 3 |
| 321 | 50.53 | wind | 7.0 | 270 | < th | dose independent | rect. | 22 | 13 |
| 343 | 50.58 | wind | 9.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 344 | 50.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 347 | 50.58 | humidity | 50.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 350 | 50.58 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 4 | 1 |
| 351 | 50.58 | atmosphere | 1010.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 353 | 50.58 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 356 | 50.58 | temperature | 10.0 | 270 | > th | dose independent | rect. | 5 | 23 |
| 360 | 50.59 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 364 | 50.60 | wind | 5.0 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 368 | 50.61 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 4 | 1 |
| 374 | 50.61 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 4 | 1 |
| 381 | 50.63 | radiation | 1.0 | 270 | < th | dose independent | rect. | 4 | 1 |
| 390 | 50.64 | atmosphere | 1015.0 | 10 | < th | dose independent | rect. | 8 | 21 |
| 399 | 50.66 | atmosphere | 1015.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 400 | 50.66 | radiation | 40.0 | 10 | < th | dose dependent | rect. | 5 | 3 |
| 411 | 50.70 | humidity | 90.0 | 270 | > th | dose independent | sin | 6 | NA |
| 445 | 50.74 | radiation | 1.0 | 270 | < th | dose dependent | rect. | 3 | 15 |
| 447 | 50.75 | atmosphere | 1015.0 | 270 | < th | dose dependent | rect. | 3 | 2 |
| 459 | 50.79 | radiation | 1.0 | 270 | < th | dose independent | rect. | 3 | 14 |
| 461 | 50.79 | atmosphere | 1015.0 | 90 | < th | dose dependent | rect. | 4 | 4 |
| 492 | 50.86 | atmosphere | 995.0 | 10 | > th | dose dependent | rect. | 5 | 3 |
| 511 | 50.88 | humidity | 90.0 | 270 | > th | dose dependent | sin | 6 | NA |
| 520 | 50.89 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 526 | 50.90 | humidity | 80.0 | 90 | > th | dose dependent | rect. | 4 | 7 |
| 531 | 50.92 | atmosphere | 1015.0 | 90 | < th | dose independent | rect. | 8 | 20 |
| 541 | 50.94 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 1 | 11 |
| 546 | 50.95 | atmosphere | 995.0 | 270 | > th | dose independent | rect. | 6 | 21 |
| 583 | 51.02 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 8 | 22 |
| 585 | 51.03 | wind | 1.0 | 30 | > th | dose independent | rect. | 8 | 21 |
| 651 | 51.15 | humidity | 50.0 | 270 | > th | dose independent | rect. | 11 | 10 |
| 688 | 51.19 | humidity | 50.0 | 90 | > th | dose dependent | rect. | 19 | 13 |
| 726 | 51.25 | humidity | 90.0 | 270 | > th | dose dependent | rect. | 17 | 19 |
| 760 | 51.31 | humidity | 90.0 | 270 | > th | dose dependent | no | NA | NA |
| 769 | 51.32 | temperature | 10.0 | 10 | > th | dose dependent | rect. | 8 | 6 |
| 801 | 51.36 | wind | 9.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 802 | 51.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 805 | 51.36 | humidity | 50.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 807 | 51.36 | atmosphere | 995.0 | 1440 | > th | dose independent | rect. | 5 | 4 |
| 808 | 51.36 | atmosphere | 1015.0 | 1440 | < th | dose independent | rect. | 5 | 4 |
| 810 | 51.36 | humidity | 50.0 | 270 | > th | dose independent | rect. | 2 | 15 |
| 811 | 51.36 | temperature | 10.0 | 1440 | > th | dose independent | rect. | 9 | 20 |
| 841 | 51.39 | humidity | 50.0 | 270 | > th | dose independent | rect. | 22 | 13 |
| 851 | 51.41 | humidity | 90.0 | 270 | < th | dose independent | sin | 6 | NA |
| 852 | 51.41 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 8 | 2 |
| 868 | 51.43 | humidity | 50.0 | 10 | > th | dose independent | rect. | 8 | 21 |
| 879 | 51.44 | wind | 9.0 | 90 | < th | dose dependent | rect. | 17 | 11 |
| 936 | 51.51 | temperature | 15.0 | 270 | > th | dose dependent | rect. | 7 | 4 |